1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchSeqShop: Calling Your Own Genome, May 2015 (view source)
Revision as of 11:22, 22 May 2015
, 11:22, 22 May 2015→Annotation / Lookup against dbSNP
If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs
If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs
$HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbsnp_142.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6 --out runmake.rsid --autosomes
$HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbsnp_142.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6 --out runmake.rsid
Looking up SNPs by rsID is possible by (for example, rs17766217) -- How can we find its position?
Looking up SNPs by rsID is possible by (for example, rs17766217) -- How can we find its position?
