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, 10:24, 22 May 2015
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| If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs | | If you want to run this command across all chromosomes in parallel, you can use the special script run-command-wgs |
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− | $HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbSNP.b138/dbsnp_138.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6 | + | $HK/run-make --repeat-chr --cmd "$HK/vcf-add-rsid -vcf $OUT/vcfs/chr1/chr1.filtered.vcf.gz --db $HK/../data/dbsnp_142.b37.vcf.gz --out $OUT/vcfs/chr1/chr1.filtered.rsid.vcf.gz" --numjobs 6 |
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| Looking up SNPs by rsID is possible by (for example) | | Looking up SNPs by rsID is possible by (for example) |