View source for SeqShop: December 2014

Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/ 

Workshop Schedule: [[Media:SeqShopScheduleDec2014.pdf|SeqShopScheduleDec2014.pdf]]


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! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]]
|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
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| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
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| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
| [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]]
[http://iobio.io Live experimentation with IOBIO]
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! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
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| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]]
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]]
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! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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| [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]]
|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
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| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
|[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]]
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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| [[Media:Seqshop genetic association analysis 141211.pdf|Genetic Association Analysis]]
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! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]]
|rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]''
''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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| [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
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