Difference between revisions of "SeqShop: December 2014"

From Genome Analysis Wiki
Jump to navigationJump to search
 
Line 6: Line 6:
 
{| class="wikitable" cellpadding=5
 
{| class="wikitable" cellpadding=5
 
|-
 
|-
−
! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
+
! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
|-
 
|-
 
|
 
|
 
| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
 
| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
 
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]]
 
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]]
 +
|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
 
|-
 
|-
 
|
 
|
 
| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
 
| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
−
| [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]]
+
|  
 
|-
 
|-
 
|
 
|
 
| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
 
| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
−
| [http://iobio.io Live experimentation with IOBIO]
+
| [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]]
−
|-
+
[http://iobio.io Live experimentation with IOBIO]
−
|
 
−
|
 
−
|''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
 
 
|-
 
|-
−
! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
+
! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
|-
 
|-
 
|
 
|
 
| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
 
| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
 
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]]
 
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]]
 +
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
|-
 
|-
 
|
 
|
Line 34: Line 33:
 
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]]
 
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]]
 
|-
 
|-
−
|
+
! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
−
|
 
−
| ''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
−
|-
 
−
! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
 
 
|-
 
|-
 
|
 
|
Line 44: Line 39:
 
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
 
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
 
| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]]
 
| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]]
−
''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
+
|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
|-
 
|-
−
! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
+
! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
|-
 
|-
 
|
 
|
 
| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
 
| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
−
| ''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
+
|[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]]
−
[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]]
+
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
|-
 
|-
 
|
 
|
Line 57: Line 52:
 
|
 
|
 
|-
 
|-
−
! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical
+
! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 +
|-
 +
|
 +
|
 +
|[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]]
 +
|rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]''
 +
''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
|-
 
|-
 
|
 
|
 
| [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
 
| [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
−
|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]''
+
|
−
[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]]
 
−
 
 
−
''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
 
 
|}
 
|}

Latest revision as of 12:17, 18 December 2014

Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/

Workshop Schedule: SeqShopScheduleDec2014.pdf


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Practical Intro SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies
Sequence Mapping and Assembly SeqShop: Sequence Mapping and Assembly Practical

Live experimentation with IOBIO

Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday Lecture Practical Own Genome Analysis
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical SeqShop: Calling Your Own Genome
Genetic Association Analysis
Friday Lecture Practical Own Genome Analysis
SeqShop: Genetic Association Analysis Practical SeqShop: Ancestry On Your Own Genome

SeqShop: Calling Your Own Genome

Example of a Whole Genome Association Study
Retrieved from "http://genome.sph.umich.edu/w/index.php?title=SeqShop:_December_2014&oldid=12451"