Difference between revisions of "SeqShop: Friday - Practicing what we learned, June 2014"
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− | [[SeqShop: Calling Your Own Genome]] | + | '''Note:''' the latest version of this practical is available at: [[SeqShop: Friday - Practicing what we learned]] |
+ | * The ones here is the original one from the June workshop (updated to be run from elsewhere) | ||
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+ | [[SeqShop: Calling Your Own Genome, June 2014]] | ||
Extracting regions from a BAM using a bed file. | Extracting regions from a BAM using a bed file. | ||
* bamUtil writeRegion | * bamUtil writeRegion | ||
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What's involved in the alignment pipeline? | What's involved in the alignment pipeline? | ||
* [[File:AlignmentPipeline.jpg|1200px]] | * [[File:AlignmentPipeline.jpg|1200px]] | ||
+ | ** Note: Following slide is a couple years old, so is out of date! | ||
+ | [[File:RecabGATK.png|500px]] | ||
What's involved in the snpcall pipeline? | What's involved in the snpcall pipeline? | ||
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− | [[SeqShop: Ancestry On Your Own Genome]] | + | [[SeqShop: Ancestry On Your Own Genome, June 2014]] |
Latest revision as of 14:31, 13 November 2014
Note: the latest version of this practical is available at: SeqShop: Friday - Practicing what we learned
- The ones here is the original one from the June workshop (updated to be run from elsewhere)
SeqShop: Calling Your Own Genome, June 2014
Extracting regions from a BAM using a bed file.
- bamUtil writeRegion
What's involved in the alignment pipeline?
What's involved in the snpcall pipeline?