Difference between revisions of "SeqShop: Friday - Practicing what we learned, June 2014"
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What's involved in the alignment pipeline? | What's involved in the alignment pipeline? | ||
* [[File:AlignmentPipeline.jpg|1200px]] | * [[File:AlignmentPipeline.jpg|1200px]] | ||
| − | ** [[File:RecabGATK.png|500px]] | + | ** Note: Following slide is a couple years old, so is out of date! |
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| + | [[File:RecabGATK.png|500px]] | ||
What's involved in the snpcall pipeline? | What's involved in the snpcall pipeline? | ||
Revision as of 08:59, 20 June 2014
SeqShop: Calling Your Own Genome
Extracting regions from a BAM using a bed file.
- bamUtil writeRegion
- (next week - minor bug until I release)
What's involved in the alignment pipeline?
- Note: Following slide is a couple years old, so is out of date!
What's involved in the snpcall pipeline?
- Clip Overlap
