Difference between revisions of "SeqShop: Friday - Practicing what we learned, June 2014"

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Extracting regions from a BAM using a bed file.
 
Extracting regions from a BAM using a bed file.
 
* bamUtil writeRegion
 
* bamUtil writeRegion
** (next week - minor bug until I release)
 
  
  

Revision as of 11:44, 11 July 2014

SeqShop: Calling Your Own Genome


Extracting regions from a BAM using a bed file.

  • bamUtil writeRegion


What's involved in the alignment pipeline?

  • AlignmentPipeline.jpg
    • Note: Following slide is a couple years old, so is out of date!

RecabGATK.png

What's involved in the snpcall pipeline?

  • SnpcallPipeline.jpg
    • Clip Overlap


SeqShop: Ancestry On Your Own Genome