SeqShop: Friday - Practicing what we learned, June 2014

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SeqShop: Calling Your Own Genome


Extracting regions from a BAM using a bed file.

  • bamUtil writeRegion


What's involved in the alignment pipeline?

  • AlignmentPipeline.jpg
    • Note: Following slide is a couple years old, so is out of date!

RecabGATK.png

What's involved in the snpcall pipeline?

  • SnpcallPipeline.jpg
    • Clip Overlap


SeqShop: Ancestry On Your Own Genome

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