SeqShop: Friday - Practicing what we learned, June 2014

From Genome Analysis Wiki
Revision as of 14:31, 13 November 2014 by Mktrost (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

Note: the latest version of this practical is available at: SeqShop: Friday - Practicing what we learned

  • The ones here is the original one from the June workshop (updated to be run from elsewhere)


SeqShop: Calling Your Own Genome, June 2014


Extracting regions from a BAM using a bed file.

  • bamUtil writeRegion


What's involved in the alignment pipeline?

  • AlignmentPipeline.jpg
    • Note: Following slide is a couple years old, so is out of date!

RecabGATK.png

What's involved in the snpcall pipeline?

  • SnpcallPipeline.jpg
    • Clip Overlap


SeqShop: Ancestry On Your Own Genome, June 2014

Retrieved from "http://genome.sph.umich.edu/w/index.php?title=SeqShop:_Friday_-_Practicing_what_we_learned,_June_2014&oldid=11984"