Difference between revisions of "SeqShop: June 2014"
From Genome Analysis Wiki
Jump to navigationJump to search| (15 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| − | Sequence Analysis Workshop June 16-20, 2014 | + | '''Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/ ''' |
| + | |||
| + | |||
| + | '''Note:''' new versions of these practicals are available at: [[SeqShop: December 2014]] | ||
| + | * The ones here are the original ones from the June workshop (updated to be run from elsewhere) | ||
{| class="wikitable" cellpadding=5 | {| class="wikitable" cellpadding=5 | ||
| Line 6: | Line 10: | ||
|- | |- | ||
| [[Media:2014.06_-_Abecasis_Workshop_Introduction.pdf|Design of Human Genetic Studies]] | | [[Media:2014.06_-_Abecasis_Workshop_Introduction.pdf|Design of Human Genetic Studies]] | ||
| − | | [ | + | | [http://iobio.io Interacting with Sequence Data] |
|- | |- | ||
| [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]] | | [[Media:Mapping and assembly.pdf|Sequence Mapping and Assembly]] | ||
| − | | [[SeqShop: Sequence Mapping and Assembly Practical]] | + | | [[SeqShop: Sequence Mapping and Assembly Practical, June 2014]] |
|- | |- | ||
! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical | ! style="background:#ABE" | Tuesday Lecture !! style="background:#ABE" | Practical | ||
|- | |- | ||
| [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]] | | [[Media:SNPcalling.pdf|Variant Calling and Filtering for SNPs]] | ||
| − | | [[SeqShop: Variant Calling and Filtering for SNPs Practical]] | + | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014]] |
|- | |- | ||
| − | | Variant Calling and Filtering for INDELs | + | | [[Media:Variant_Calling_and_Filtering_for_INDELs.pdf|Variant Calling and Filtering for INDELs]] |
| − | | [[SeqShop: Variant Calling and Filtering for INDELs Practical]] | + | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014]] |
|- | |- | ||
! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical | ! style="background:#ABE" | Wednesday Lecture !! style="background:#ABE" | Practical | ||
|- | |- | ||
| − | | Analysis of Structural Variation | + | | [[Media:Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] |
| − | | [[SeqShop: Analysis of Structural Variation Practical]] | + | [[Media:Seqshop_cnv_partb_2014_06.pdf|Analysis of Structural Variation - Part 2]] |
| + | | [[SeqShop: Analysis of Structural Variation Practical, June 2014]] | ||
| + | ''[[SeqShop: Aligning Your Own Genome, June 2014]]'' | ||
|- | |- | ||
! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical | ! style="background:#ABE" | Thursday Lecture !! style="background:#ABE" | Practical | ||
|- | |- | ||
| − | | Estimates of Genetic Ancestry | + | | [[Media:Worshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] |
| − | | [[SeqShop: Estimates of Genetic Ancestry Practical]] | + | | [[SeqShop: Estimates of Genetic Ancestry Practical, June 2014]] |
| + | |- | ||
| + | | [[Media:Seqshop_cnv_partb_2014_06.pdf|Genetic Association Analysis]] | ||
| + | | [[SeqShop: Genetic Association Analysis Practical, June 2014]] | ||
| + | |- | ||
| + | ! style="background:#ABE" | Friday Lecture !! style="background:#ABE" | Practical | ||
|- | |- | ||
| − | | | + | | [[Media:2014.06_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] |
| − | | [[SeqShop: | + | | ''[[SeqShop: Friday - Practicing what we learned, June 2014]]'' |
|} | |} | ||
Latest revision as of 14:21, 13 November 2014
Sequence Analysis Workshop June 16-20, 2014: http://seqshop.sph.umich.edu/
Note: new versions of these practicals are available at: SeqShop: December 2014
- The ones here are the original ones from the June workshop (updated to be run from elsewhere)
