Difference between revisions of "SeqShop: May 2015"

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Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
 
Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
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Workshop Schedule: [[Media:SeqShopScheduleDec2014.pdf|SeqShopScheduleDec2014.pdf]]
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{| class="wikitable" cellpadding=5
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|-
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! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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|
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| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
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| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]]
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|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
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|-
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|
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| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
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|
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|-
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|
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| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
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| [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]]
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[http://iobio.io Live experimentation with IOBIO]
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|-
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! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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|
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| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
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| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]]
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| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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|-
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|
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| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
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| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]]
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|-
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! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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|
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| [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
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[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
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| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]]
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|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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|-
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! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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|
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| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
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|[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]]
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| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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|-
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|
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| [[Media:Seqshop genetic association analysis 141211.pdf|Genetic Association Analysis]]
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|
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|-
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! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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|
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|
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|[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]]
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|rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]''
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''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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|-
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|
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| [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]]
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|
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|}

Revision as of 20:42, 3 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Workshop Schedule: SeqShopScheduleDec2014.pdf


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Practical Intro SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies
Sequence Mapping and Assembly SeqShop: Sequence Mapping and Assembly Practical

Live experimentation with IOBIO

Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday Lecture Practical Own Genome Analysis
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical SeqShop: Calling Your Own Genome
Genetic Association Analysis
Friday Lecture Practical Own Genome Analysis
SeqShop: Genetic Association Analysis Practical SeqShop: Ancestry On Your Own Genome

SeqShop: Calling Your Own Genome

Example of a Whole Genome Association Study