SeqShop: May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda

Monday	Lecture	Practical	Own Genome Analysis
	Brief Introduction and Background	SeqShop: Quick intro to Linux	SeqShop: Aligning Your Own Genome
	Design of Human Genetic Studies	iobio: Visualizing BAM statistics
	Sequence Mapping and Assembly	SeqShop: Sequence Mapping and Assembly Practical
Tuesday	Lecture	Practical	Own Genome Analysis
	Variant Calling and Filtering for SNPs	SeqShop: Variant Calling and Filtering for SNPs Practical	SeqShop: Calling Your Own Genome
	Variant Calling and Filtering for INDELs	SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday	Lecture	Practical	Own Genome Analysis
	Analysis of Structural Variation - Part 1 Analysis of Structural Variation - Part 2	SeqShop: Analysis of Structural Variation Practical	SeqShop: Calling Your Own Genome
Thursday	Lecture	Practical	Own Genome Analysis
	Estimates of Genetic Ancestry	SeqShop: Estimates of Genetic Ancestry Practical	SeqShop: Ancestry On Your Own Genome
	Genetic Association Analysis	SeqShop: Association Analysis
Friday	Lecture	Practical	Own Genome Analysis
	Example of a Whole Genome Association Study	SeqShop: Genetic Association Analysis Practical