Difference between revisions of "SeqShop: May 2015"

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| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
 
| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
 
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
 
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]''
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| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
 
| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
 
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
 
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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| rowspan="2"|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
 
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| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
 
| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
 
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
 
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
 
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! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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| [[Media:2014.12_-_Workshop_Closing.pdf|Summary]]
 
| [[Media:2014.12_-_Workshop_Closing.pdf|Summary]]
 
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|rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]''
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|rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]''
 
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Revision as of 17:54, 15 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Quick intro to Linux SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies SeqShop: Sequence Mapping and Assembly Practical
Sequence Mapping and Assembly iobio: Visualizing BAM statistics
Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical
Wednesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical
Genetic Association Analysis SeqShop: Association Analysis
Friday Lecture Practical Own Genome Analysis
Summary SeqShop: Ancestry On Your Own Genome