Difference between revisions of "SeqShop: May 2015"

From Genome Analysis Wiki
Jump to: navigation, search
Line 9: Line 9:
 
|-
 
|-
 
|
 
|
| [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]]
+
| [[Media:TBD|Brief Introduction and Background]]
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
+
| [[Media:May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
 
|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]''
 
|rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]''
 
|-
 
|-
 
|
 
|
| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
+
| [[Media:TBD|Design of Human Genetic Studies]]
 
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
 
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
 
|-
 
|-
 
|
 
|
| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
+
| [[Media:Mapping and assembly May2015.pdf|Sequence Mapping and Assembly]]
 
|  [http://bam.iobio.io iobio: Visualizing BAM statistics]
 
|  [http://bam.iobio.io iobio: Visualizing BAM statistics]
 
|-
 
|-
Line 29: Line 29:
 
|-
 
|-
 
|
 
|
| [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
+
| [[Media:Analysis of SV May2015.pdf|Analysis of Structural Variation - Part 1]]
 
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
 
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
 
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]
 
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]

Revision as of 17:04, 17 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Quick intro to Linux SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies SeqShop: Sequence Mapping and Assembly Practical
Sequence Mapping and Assembly iobio: Visualizing BAM statistics
Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical
Wednesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical
Genetic Association Analysis SeqShop: Association Analysis
Friday Lecture Practical Own Genome Analysis
Summary SeqShop: Ancestry On Your Own Genome