Difference between revisions of "SeqShop: May 2015"

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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
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| [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]]
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| [[Media:Stratification.pptx|Estimates of Genetic Ancestry]]
 
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
 
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
 
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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
 
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| [[Media:2014.12_-_Workshop_Closing.pdf|Summary]]
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| [[Media:|Summary]]
 
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|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]''
 
|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]''
 
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Revision as of 23:02, 20 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda


Monday
Lecture Practical Own Genome Analysis
Welcome/Design of Human Genetic Studies SeqShop: Quick intro to Linux SeqShop: Aligning Your Own Genome
Sequence Mapping and Assembly SeqShop: Sequence Mapping and Assembly Practical
Tuesday
Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical

iobio: Visualizing BAM statistics

SeqShop: Calling Your Own Genome
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical
Wednesday
Lecture Practical Own Genome Analysis
Variant Calling and Filtering for INDELs

More Lessons on Indels + De-novo Assembly Methods

SeqShop: Variant Calling and Filtering for INDELs Practical SeqShop: Calling Your Own Genome
Thursday
Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical
Genetic Association Analysis SeqShop: Association Analysis SeqShop: Calling Your Own Genome
Friday
Lecture Practical Own Genome Analysis
[[Media:|Summary]] SeqShop: Ancestry On Your Own Genome