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Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/
Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda
{| class="wikitable" cellpadding=5
|-
! style="background:#ABE" colspan="3"|Monday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:2015.05 - Workshop Intro.pdf|Welcome/Design of Human Genetic Studies]]
| [[Media:May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
|rowspan="2" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]''
|-
| [[Media:Mapping and assembly May2015.pdf|Sequence Mapping and Assembly]]
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
|-
! style="background:#ABE" colspan="3" | Tuesday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:seqshop_may_2015_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
[http://bam.iobio.io iobio: Visualizing BAM statistics]
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
|-
| [[Media:Analysis of SV May2015.pdf|Analysis of Structural Variation - Part 1]]
[[Media:May2015 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]
|-
! style="background:#ABE" colspan="3" | Wednesday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]]
[[Media:seqshop_2015_day3_indel_assembly.pdf|More Lessons on Indels + De-novo Assembly Methods]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
|-
! style="background:#ABE" colspan="3" | Thursday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:Stratification.pptx|Estimates of Genetic Ancestry]]
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
|
|-
| [[Media:Seqshop genetic association analysis 150521.pptx|Genetic Association Analysis]]
|[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]]
| ''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
|-
! style="background:#ABE" colspan="3" | Friday
|-
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
|-
| [[Media:2015.05_-_Workshop_Closing.pdf|Summary]]
|
|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]''
|-
|}
