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Revision as of 10:39, 8 December 2014
, 10:39, 8 December 2014→INFO field
GF=0.96,0.04,0 : genotype frequencies based on GC
GF=0.96,0.04,0 : genotype frequencies based on GC
NS=57 : no. of samples
NS=57 : no. of samples
HWEAF=0.020 : genotype likelihood based estimation of the allele frequency assuming Hardy Weinberg equilibrium
HWEAF=0.020 : genotype likelihood based estimation of the allele frequency assuming Hardy Weinberg equilibrium
HWEGF=0.96,0.04,0.00 : genotype frequency derived from HWEAF
HWEGF=0.96,0.04,0.00 : genotype frequency derived from HWEAF
HWE_LPVAL=-0.18 : log p value of HWE test
HWE_LPVAL=-0.18 : log p value of HWE test
FIC=-0.003 : genotype likelihood based inbreeding coefficient
FIC=-0.003 : genotype likelihood based inbreeding coefficient
AB=0.38 : genotype likelihood based allele balance
AB=0.38 : genotype likelihood based allele balance
