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Revision as of 10:37, 19 May 2015
, 10:37, 19 May 2015no edit summary
** How to evaluate the quality of INDEL calls
** How to evaluate the quality of INDEL calls
== Setup in person at the SeqShop Workshop ==
== Setup ==
''This section is specifically for the SeqShop Workshop computers.''
''This section is specifically for the SeqShop Workshop computers.''
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{{SeqShopLogin}}
{{SeqShopLogin}}
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== Setup when running on your own outside of the SeqShop Workshop ==
=== Prerequisite Tutorials ===
This tutorial builds on the alignment tutorial, if you have not already, please first run that tutorial: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical, May 2015|Alignment Tutorial]]
This tutorial builds on the alignment tutorial, if you have not already, please first run that tutorial: [[SeqShop:_Sequence_Mapping_and_Assembly_Practical, May 2015|Alignment Tutorial]]
It also uses the bam.list file created in the SnpCall Tutorial. If you have not yet run that tutorial, please follow the directions at: [[SeqShop:_Variant_Calling_and_Filtering_for_SNPs_Practical, May 2015#GotCloud_BAM_List_File|GotCloud BAM List File]]
It also uses the bam.list file created in the SnpCall Tutorial. If you have not yet run that tutorial, please follow the directions at: [[SeqShop:_Variant_Calling_and_Filtering_for_SNPs_Practical, May 2015#GotCloud_BAM_List_File|GotCloud BAM List File]]
{{SeqShopRemoteEnv}}
== Examining GotCloud Indel Input files ==
== Examining GotCloud Indel Input files ==
