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We will use the same configuration file as we used yesterday in GotCloud Align.
 
We will use the same configuration file as we used yesterday in GotCloud Align.
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See [[SeqShop:_Sequence_Mapping_and_Assembly_Practical#GotCloud_Configuration_File for more details|SeqShop: Alignment: GotCloud Configuration File]]
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Note we want to limit snpcall to just chr22 so the configuration already has <code>CHRS = 22</code>.
    
=== GotCloud BAM Index File ===
 
=== GotCloud BAM Index File ===

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