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, 19:42, 16 June 2014
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| === Reference Files === | | === Reference Files === |
− | Reference files can be downloaded with GotCloud or from other sources | + | Reference files can be downloaded with GotCloud or from other sources. |
| + | * For this practical, I already downloaded them for you. |
| * See [[GotCloud: Genetic Reference and Resource Files]] for more information on downloading/generating reference files | | * See [[GotCloud: Genetic Reference and Resource Files]] for more information on downloading/generating reference files |
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| #* hapmap - used as likely true positives for SVM filtering and for generating summary statistics | | #* hapmap - used as likely true positives for SVM filtering and for generating summary statistics |
| #* dbsnp - used for generating summary statistics | | #* dbsnp - used for generating summary statistics |
| + | |
| + | We looked at them yesterday, but you can take another look at the chromosome 22 reference files included for this tutorial: |
| + | ls ${REF} |
| + | |
| + | <ul> |
| + | <div class="mw-collapsible mw-collapsed" style="width:200px"> |
| + | <li>View Screenshot</li> |
| + | <div class="mw-collapsible-content"> |
| + | [[File:RefDir.png|500px]] |
| + | </div> |
| + | </div> |
| + | </ul> |
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| === GotCloud Configuration File === | | === GotCloud Configuration File === |