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Revision as of 10:41, 26 June 2014
, 10:41, 26 June 2014→Run GotCloud SnpCall
Now that we have all of our input files, we need just a simple command to run:
Now that we have all of our input files, we need just a simple command to run:
${GC}/gotcloud snpcall --conf ${IN}/gotcloud.conf --numjobs 4 --region 22:36000000-37000000
${GC}/gotcloud snpcall --conf ${SS}/gotcloud.conf --numjobs 4 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
* --numjobs tells GotCloud how many jobs to run in parallel
* --numjobs tells GotCloud how many jobs to run in parallel
** Depends on your system
** Depends on your system
