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Revision as of 10:45, 26 June 2014
, 10:45, 26 June 2014→Running GotCloud Genotype Refinement
=== Running GotCloud Genotype Refinement ===
=== Running GotCloud Genotype Refinement ===
Since everything is setup, just run the following command (very similar to snpcall).
Since everything is setup, just run the following command (very similar to snpcall).
${GC}/gotcloud ldrefine --conf ${IN}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000
${GC}/gotcloud ldrefine --conf ${SS}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
* Beagle will take about 2-3 minutes to complete
* Beagle will take about 2-3 minutes to complete
