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We will use the same configuration file as we used yesterday in GotCloud Align.
 
We will use the same configuration file as we used yesterday in GotCloud Align.
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See [[SeqShop:_Sequence_Mapping_and_Assembly_Practical, June 2014#GotCloud Configuration File|SeqShop: Alignment: GotCloud Configuration File]] for more details
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See [[SeqShop:_Sequence Mapping and Assembly Practical, June 2014#GotCloud Configuration File|SeqShop: Alignment: GotCloud Configuration File]] for more details
 
* Note we want to limit snpcall to just chr22 so the configuration already has <code>CHRS = 22</code> (default was 1-22 & X).
 
* Note we want to limit snpcall to just chr22 so the configuration already has <code>CHRS = 22</code> (default was 1-22 & X).
  

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