Page history
13 November 2014
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Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
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11 July 2014
10 July 2014
9 July 2014
→Improvements
+16
→Running GotCloud Genotype Refinement
+183
→Genotype Refinement Output
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→GotCloud BAM Index File
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→Setup when running on your own outside of the SeqShop Workshop
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26 June 2014
→Run GotCloud SnpCall
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-1
→Did I find interesting variants?
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→Running GotCloud Genotype Refinement
+36
→Genotype Refinement Input
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→Passing SNPs
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→Filtered VCF
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→Run GotCloud SnpCall
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→Examining GotCloud SnpCall Input files
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+1,822
17 June 2014
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→Improvements
→diff
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→Run GotCloud SnpCall
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→Did I find interesting variants?
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→Did I find interesting variants?
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→Did I find interesting variants?
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→Genotype Refinement Output
+529
16 June 2014
→Filtering Summary Statistics
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→Filtering Summary Statistics
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→Genotype Refinement Input
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→Filtering Summary Statistics
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→Examining GotCloud SnpCall Input files
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→Reference Files
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→Reference Files
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→Setup your run environment
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→Setup your run environment
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15 June 2014
→GotCloud BAM Index File
-4
→Sequnce Alignment Files: BAM Files
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→Genotype Refinement Output
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→Genotype Refinement Output
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→Genotype Refinement Output
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