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Revision as of 22:59, 18 May 2015
, 22:59, 18 May 2015→Running GotCloud Genotype Refinement
=== Running GotCloud Genotype Refinement ===
=== Running GotCloud Genotype Refinement ===
Since everything is setup, just run the following command (very similar to snpcall).
Since everything is setup, just run the following command (very similar to snpcall).
${GC}/gotcloud ldrefine --conf ${SS}/gotcloud.conf --numjobs 6 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
${GC}/gotcloud ldrefine --conf ${SS}/gotcloud.conf --numjobs 8 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
* Beagle will take about 1-3 minutes to complete
* Beagle will take about 1-3 minutes to complete
