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Jump to navigationJump to search- 17:36, 21 October 2013 diff hist +327 Vt →Normalization
- 17:21, 21 October 2013 diff hist +5 Vt →Normalization
- 17:19, 21 October 2013 diff hist -40 Vt →Normalization
- 17:17, 21 October 2013 diff hist +610 Vt →Normalization
- 16:38, 21 October 2013 diff hist +16 Vt
- 16:32, 21 October 2013 diff hist +100 Vt →Common options
- 16:27, 21 October 2013 diff hist +7 Vt →Normalization
- 16:26, 21 October 2013 diff hist +10 Vt →Location
- 16:26, 21 October 2013 diff hist +24 Vt →Common options
- 16:25, 21 October 2013 diff hist -7,518 Vt
- 16:25, 21 October 2013 diff hist +7 Vt →Normalization
- 16:24, 21 October 2013 diff hist -1 Variant Normalization →Implementation
- 16:24, 21 October 2013 diff hist -1 Variant Normalization →Implementation
- 16:17, 21 October 2013 diff hist +8,814 Vt
- 09:35, 13 July 2013 diff hist +1 Variant Normalization →Maintained by
- 09:35, 13 July 2013 diff hist -1 Variant Normalization →Maintained by
- 09:34, 13 July 2013 diff hist +102 Variant Normalization →Maintained by
- 09:31, 13 July 2013 diff hist 0 Variant Normalization →Normalization
- 09:30, 13 July 2013 diff hist -3 Variant Normalization →Normalization
- 09:30, 13 July 2013 diff hist +6 Variant Normalization →Introduction
- 09:30, 13 July 2013 diff hist +17 Variant Normalization →Normalization
- 09:29, 13 July 2013 diff hist +17 Variant Normalization →Normalization
- 09:28, 13 July 2013 diff hist +4 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 09:28, 13 July 2013 diff hist -4 Variant Normalization →Algorithm for Normalization
- 18:20, 12 July 2013 diff hist -2 Variant Normalization →Left alignment
- 18:19, 12 July 2013 diff hist +2 Variant Normalization →Left alignment
- 18:19, 12 July 2013 diff hist +146 Variant Normalization →Left alignment
- 18:16, 12 July 2013 diff hist -2 Variant Normalization →Left alignment
- 18:14, 12 July 2013 diff hist +22 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 17:32, 12 July 2013 diff hist 0 File:Variant normalization algorithm.png uploaded a new version of "File:Variant normalization algorithm.png" current
- 17:31, 12 July 2013 diff hist -74 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 17:27, 12 July 2013 diff hist -109 Variant Normalization →Algorithm for Normalization
- 17:25, 12 July 2013 diff hist 0 File:Variant normalization algorithm.png uploaded a new version of "File:Variant normalization algorithm.png"
- 17:20, 12 July 2013 diff hist -18 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 17:18, 12 July 2013 diff hist +2 Variant Normalization →Proof of property
- 17:18, 12 July 2013 diff hist -15 Variant Normalization →Proof of left alignment property
- 17:17, 12 July 2013 diff hist 0 Variant Normalization →Left alignment
- 17:15, 12 July 2013 diff hist 0 Variant Normalization
- 17:04, 12 July 2013 diff hist +391 Variant Normalization →Normalization
- 16:46, 12 July 2013 diff hist +3 Variant Normalization →Normalization
- 16:45, 12 July 2013 diff hist 0 N File:Normalization str.png
- 16:45, 12 July 2013 diff hist 0 N File:Normalization mnp.png
- 15:17, 11 July 2013 diff hist +85 Variant Normalization →Algorithm for Normalization
- 15:52, 9 July 2013 diff hist +61 Variant Normalization →Left alignment
- 15:51, 9 July 2013 diff hist 0 Variant Normalization →Algorithm for Normalization
- 15:50, 9 July 2013 diff hist -115 Variant Normalization →Algorithm for Normalization
- 15:44, 9 July 2013 diff hist 0 File:Variant normalization algorithm.png uploaded a new version of "File:Variant normalization algorithm.png"
- 15:41, 9 July 2013 diff hist +80 Variant Normalization →Algorithm for Normalization
- 15:41, 9 July 2013 diff hist -11 Variant Normalization →Proof of left alignment
- 15:35, 9 July 2013 diff hist +34 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 15:33, 9 July 2013 diff hist +34 Variant Normalization →How to observe that a variant is not left aligned?
- 15:13, 9 July 2013 diff hist -2 Variant Normalization →Normalization
- 15:12, 9 July 2013 diff hist +292 Variant Normalization
- 15:11, 9 July 2013 diff hist +4 Variant Normalization
- 15:10, 9 July 2013 diff hist 0 Left alignment Redirected page to Variant Normalization current
- 15:09, 9 July 2013 diff hist +35 N Left alignment Redirected page to Variant normalization
- 15:08, 9 July 2013 diff hist +3,110 N Variant Normalization Created page with '= Introduction = Variant representation in Variant Call Format is non unique. We describe a variant normalization here that is parsimonious and left aligned. = Normalization =…'
- 14:43, 9 July 2013 diff hist 0 N File:Variant normalization algorithm.png
- 14:32, 9 July 2013 diff hist 0 N File:Left alignment.png current
- 14:28, 9 July 2013 diff hist 0 N File:Left alignment.pdf current
- 13:40, 4 June 2013 diff hist -1,681 HWEP Redirected page to Genotype Likelihood based Hardy-Weinberg Test current
- 13:38, 4 June 2013 diff hist -2,329 AF Redirected page to Genotype Likelihood based Allele Frequency current
- 13:37, 4 June 2013 diff hist -5 Genotype Likelihood based Inbreeding Coefficient →Introduction
- 13:36, 4 June 2013 diff hist -2 Genotype Likelihood based Inbreeding Coefficient →Introduction
- 13:32, 4 June 2013 diff hist +1,858 N Genotype Likelihood based Hardy-Weinberg Test Created page with '=== Introduction === This page details a Hardy-Weinberg Equilibrium test based on genotype likelihoods in NGS data. === Formulation === Hardy Weinberg equilibrium is expected …'
- 13:30, 4 June 2013 diff hist -3 Genotype Likelihood based Allele Frequency →Introduction
- 13:22, 4 June 2013 diff hist +2,213 N Genotype Likelihood based Inbreeding Coefficient Created page with '=== Introduction === Inbreeding Coefficients are an important statistic in the study of genetic variants. This page details EM algorithms to estimate inbreeding coefficients fro…'
- 13:21, 4 June 2013 diff hist -35 FIC Redirected page to Genotype Likelihood based Inbreeding Coefficient current
- 13:20, 4 June 2013 diff hist -1,901 FIC Redirected page to Https://statgen.sph.umich.edu/wiki/Genotype Likelihood based Inbreeding Coefficient
- 13:13, 4 June 2013 diff hist +2,589 N Genotype Likelihood based Allele Frequency Created page with '=== Introduction === Allele frequencies are an important statistic in the study of genetic variants. This page details EM algorithms to estimate allele frequencies from genoty…'
- 12:36, 18 May 2013 diff hist -3,263 Vt Blanked the page
- 14:17, 11 April 2013 diff hist +29 FIC →Formulation
- 14:16, 11 April 2013 diff hist +212 FIC →Formulation
- 14:13, 11 April 2013 diff hist +22 FIC
- 14:05, 11 April 2013 diff hist -1 FIC
- 14:05, 11 April 2013 diff hist -27 HWEP →Derivation
- 14:04, 11 April 2013 diff hist -4 AF →Derivation by
- 14:03, 11 April 2013 diff hist +104 AF →Derivation by
- 14:02, 11 April 2013 diff hist +11 AF →Estimation of Genotype Frequencies without assuming HWE
- 14:01, 11 April 2013 diff hist +66 AF →Estimation of Genotype Frequencies without assuming HWE
- 13:55, 11 April 2013 diff hist +14 FIC
- 13:35, 11 April 2013 diff hist -22 HWEP →Maintained by
- 13:34, 11 April 2013 diff hist +54 HWEP →Maintained by
- 13:34, 11 April 2013 diff hist +31 AF
- 13:33, 11 April 2013 diff hist -1 FIC
- 11:05, 11 April 2013 diff hist +20 AF →Estimation of Genotype Frequencies without assuming HWE
- 11:04, 11 April 2013 diff hist +21 HWEP
- 11:03, 11 April 2013 diff hist -8 HWEP
- 10:58, 11 April 2013 diff hist +1,722 N HWEP Created page with 'Hardy Weinberg equilibrium is expected in a panmictic population. The following formulation is a likelihood ratio test statistic that incorporates the genotype uncertainty via g…'
- 10:31, 11 April 2013 diff hist +110 FIC
- 10:30, 11 April 2013 diff hist +2,157 N AF Created page with '=== Estimation of Genotype Frequencies without assuming HWE === We propose an EM algorithm to estimate the genotype frequencies without assuming HWE. The posterior probability …'
- 08:31, 11 April 2013 diff hist +1,613 N FIC Created page with 'Many data sets consist of individuals from different populations, in the cases of structured populations, this usually result in an increased number of homozygotes. The inbreedi…'
- 21:23, 12 March 2013 diff hist +1 Vt →Left Alignment
- 16:58, 12 March 2013 diff hist +2 Vt →Filtering
- 16:55, 12 March 2013 diff hist +93 Vt →Compute Feature
- 16:53, 12 March 2013 diff hist +33 Vt →Filtering
- 16:33, 12 March 2013 diff hist +489 Vt →Discovery
- 16:26, 12 March 2013 diff hist -4 Vt
- 16:22, 12 March 2013 diff hist +116 Vt →compute_
- 16:19, 12 March 2013 diff hist +133 Vt →Introduction