User contributions
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Jump to navigationJump to search- 20:13, 15 June 2014 diff hist +862 Sequencing Workshop Analysis of Indels →Records
- 20:07, 15 June 2014 diff hist +624 Sequencing Workshop Analysis of Indels →Records
- 19:56, 15 June 2014 diff hist -725 Sequencing Workshop Analysis of Indels
- 19:39, 15 June 2014 diff hist +534 Sequencing Workshop Analysis of Indels →Motivation
- 18:12, 15 June 2014 diff hist +68 Analyses of Indels →Motivation current
- 18:12, 15 June 2014 diff hist +3,725 Sequencing Workshop Analysis of Indels →Tools
- 18:12, 15 June 2014 diff hist -3,724 Analyses of Indels →Anatomy of all.genotypes.bcf
- 18:10, 15 June 2014 diff hist -420 Sequencing Workshop Analysis of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:08, 15 June 2014 diff hist +1,288 Sequencing Workshop Analysis of Indels →Peek
- 17:51, 15 June 2014 diff hist +2,586 Sequencing Workshop Analysis of Indels →File Preparation
- 17:50, 15 June 2014 diff hist +8,821 N Sequencing Workshop Analysis of Indels Created page with "=Motivation= This wiki page details some standard Indel analyses which hopefully can help the group in understanding the issues and perform the analyses quickly without reinv..."
- 17:41, 15 June 2014 diff hist +362 Analyses of Indels →Analyses
- 17:35, 15 June 2014 diff hist +3,649 Analyses of Indels
- 17:51, 12 June 2014 diff hist +8 Vt →Partition
- 17:51, 12 June 2014 diff hist -1 Vt →Partition
- 17:44, 12 June 2014 diff hist +1,326 Vt →Annotate Variants
- 10:23, 3 June 2014 diff hist -10 Vt →Installation
- 10:22, 3 June 2014 diff hist +2 Vt →Installation
- 09:36, 27 May 2014 diff hist +1 Variant Normalization →22 May 2014
- 11:12, 26 May 2014 diff hist +114 Variant Normalization →22 May 2014
- 11:09, 26 May 2014 diff hist -5 Variant Normalization →Introduction
- 16:23, 22 May 2014 diff hist +12 Variant Normalization →Left alignment
- 16:23, 22 May 2014 diff hist +12 Variant Normalization →Parsimony
- 09:21, 22 May 2014 diff hist +63 Variant Normalization →Introduction
- 08:03, 22 May 2014 diff hist -5 Variant Normalization →22 May 2014
- 08:02, 22 May 2014 diff hist -21 Variant Normalization →22 May 2014
- 08:02, 22 May 2014 diff hist +22 Variant Normalization →20 May 2014
- 08:01, 22 May 2014 diff hist -21 Variant Normalization →20 May 2014
- 07:59, 22 May 2014 diff hist +1,239 Variant Normalization →Comparisons
- 17:27, 21 May 2014 diff hist +3 Variant Normalization →Algorithm for Normalization
- 17:26, 21 May 2014 diff hist +4 Variant Normalization →Corollary
- 17:26, 21 May 2014 diff hist -59 Variant Normalization →Lemma
- 17:23, 21 May 2014 diff hist +32 Variant Normalization →Lemma
- 17:20, 21 May 2014 diff hist +1 Variant Normalization →Left alignment
- 17:18, 21 May 2014 diff hist +177 Variant Normalization →Parsimony
- 17:13, 21 May 2014 diff hist +4 Variant Normalization →Introduction
- 08:28, 21 May 2014 diff hist +79 Variant Normalization →Comparisons
- 17:59, 20 May 2014 diff hist +1 Variant Normalization →Comparison
- 17:59, 20 May 2014 diff hist -50 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:58, 20 May 2014 diff hist -3 Variant Normalization →Normalization
- 17:58, 20 May 2014 diff hist -784 Variant Normalization →Algorithm for Normalization
- 17:57, 20 May 2014 diff hist +786 Variant Normalization →Implementation
- 17:57, 20 May 2014 diff hist +22 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:56, 20 May 2014 diff hist +80 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:56, 20 May 2014 diff hist -100 Variant Normalization →Implementation
- 17:56, 20 May 2014 diff hist -2 Variant Normalization →When is a variant normalized?
- 17:50, 20 May 2014 diff hist +40 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:42, 20 May 2014 diff hist +14 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:11, 20 May 2014 diff hist +78 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:05, 20 May 2014 diff hist +10 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:03, 20 May 2014 diff hist -68 Variant Normalization →Algorithm for Normalization
- 17:02, 20 May 2014 diff hist +114 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:59, 20 May 2014 diff hist -4 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:57, 20 May 2014 diff hist +218 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:53, 20 May 2014 diff hist +5 Variant Normalization →Why you should use vt's implementation of normalization
- 16:52, 20 May 2014 diff hist +59 Variant Normalization →Why you should use vt's implementation of normalization
- 16:51, 20 May 2014 diff hist +38 Variant Normalization →Why you should use vt's implementation of normalization
- 16:50, 20 May 2014 diff hist 0 Variant Normalization →Why you should use vt's implementation of normalization
- 16:46, 20 May 2014 diff hist +121 Variant Normalization →Why you should use vt's implementation of normalization
- 16:41, 20 May 2014 diff hist +32 Variant Normalization →Why you should use vt's implementation of normalization
- 16:40, 20 May 2014 diff hist +3 Variant Normalization →Is a variant normalized?
- 16:40, 20 May 2014 diff hist -11 Variant Normalization
- 16:39, 20 May 2014 diff hist +11 Variant Normalization →Why you should use vt's implementation of normalization
- 16:38, 20 May 2014 diff hist +87 Variant Normalization →Why you should use vt's implementation of normalization
- 16:37, 20 May 2014 diff hist +1 Variant Normalization →Maintained by
- 16:37, 20 May 2014 diff hist -2 Variant Normalization →Why you should use vt's implementation of normalization
- 16:36, 20 May 2014 diff hist +376 Variant Normalization →Implementation
- 12:56, 20 May 2014 diff hist +41 Variant Normalization →Corollary
- 12:51, 20 May 2014 diff hist +8 Variant Normalization →Introduction
- 12:42, 20 May 2014 diff hist +3 Variant Normalization →Left alignment
- 12:42, 20 May 2014 diff hist +17 Variant Normalization →Left alignment
- 09:51, 20 May 2014 diff hist +5 Variant Normalization →Introduction
- 09:50, 20 May 2014 diff hist +3 Variant Normalization →Normalization
- 20:00, 19 May 2014 diff hist -56 Variant Normalization →Algorithm for Normalization
- 19:59, 19 May 2014 diff hist -3 Variant Normalization →Corollary
- 19:58, 19 May 2014 diff hist +5 Variant Normalization →Lemma
- 19:58, 19 May 2014 diff hist +4 Variant Normalization →Parsimony
- 19:58, 19 May 2014 diff hist +5 Variant Normalization →Left alignment
- 19:57, 19 May 2014 diff hist +4 Variant Normalization →Left alignment
- 19:56, 19 May 2014 diff hist -77 Variant Normalization →Normalization
- 19:55, 19 May 2014 diff hist +7 Variant Normalization →Introduction
- 19:54, 19 May 2014 diff hist -46 Variant Normalization →Introduction
- 19:52, 19 May 2014 diff hist +14 Variant Normalization →Introduction
- 19:52, 19 May 2014 diff hist +2 Variant Normalization →Introduction
- 19:50, 19 May 2014 diff hist +34 Variant Normalization →Corollary
- 19:48, 19 May 2014 diff hist +821 Variant Normalization →Is a variant normalized?
- 19:36, 19 May 2014 diff hist +24 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 19:32, 19 May 2014 diff hist +70 Variant Normalization →Normalization
- 19:31, 19 May 2014 diff hist +90 Variant Normalization →Left alignment
- 19:30, 19 May 2014 diff hist +76 Variant Normalization →Normalization
- 19:29, 19 May 2014 diff hist +21 Variant Normalization →Left alignment
- 19:28, 19 May 2014 diff hist +1 Variant Normalization →Left alignment
- 19:28, 19 May 2014 diff hist +87 Variant Normalization →Left alignment
- 19:27, 19 May 2014 diff hist +112 Variant Normalization →Left alignment
- 19:26, 19 May 2014 diff hist -9 Variant Normalization →Left alignment
- 19:25, 19 May 2014 diff hist -4 Variant Normalization →Left alignment
- 19:25, 19 May 2014 diff hist +322 Variant Normalization →Left alignment
- 19:22, 19 May 2014 diff hist +1 Variant Normalization →Parsimony
- 19:22, 19 May 2014 diff hist +4 Variant Normalization →Left alignment
- 16:23, 19 May 2014 diff hist +118 Variant Normalization →Parsimony
- 16:19, 19 May 2014 diff hist +1 Variant Normalization →Parsimony
- 16:16, 19 May 2014 diff hist -12 Variant Normalization →Parsimony
- 16:16, 19 May 2014 diff hist +199 Variant Normalization →Parsimony
- 16:11, 19 May 2014 diff hist +31 Variant Normalization →Algorithm for Normalization
- 16:10, 19 May 2014 diff hist +2 Variant Normalization →Algorithm for Normalization
- 16:10, 19 May 2014 diff hist -67 Variant Normalization →Algorithm for Normalization
- 16:09, 19 May 2014 diff hist 0 Variant Normalization →Algorithm for Normalization
- 16:08, 19 May 2014 diff hist +10 Variant Normalization →Algorithm for Normalization
- 16:07, 19 May 2014 diff hist +680 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 15:58, 19 May 2014 diff hist +283 Variant Normalization →Algorithm for Normalization
- 15:53, 19 May 2014 diff hist +29 Variant Normalization →Left alignment
- 15:52, 19 May 2014 diff hist 0 File:Normalization str.png Atks uploaded a new version of "File:Normalization str.png"
- 15:46, 19 May 2014 diff hist +57 Variant Normalization →Parsimony
- 15:43, 19 May 2014 diff hist +32 Variant Normalization →Parsimony
- 15:42, 19 May 2014 diff hist 0 Variant Normalization →Parsimony
- 15:41, 19 May 2014 diff hist +47 Variant Normalization →Parsimony
- 15:17, 19 May 2014 diff hist -2 Variant Normalization →Left alignment
- 15:16, 19 May 2014 diff hist +11 Variant Normalization →Left alignment
- 15:14, 19 May 2014 diff hist -228 Variant Normalization →Left alignment
- 15:05, 19 May 2014 diff hist +3 Variant Normalization →Parsimony
- 15:03, 19 May 2014 diff hist -1 Variant Normalization →Introduction
- 15:03, 19 May 2014 diff hist -51 Variant Normalization →Introduction
- 15:01, 19 May 2014 diff hist +27 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:59, 19 May 2014 diff hist -2 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:55, 19 May 2014 diff hist +132 Variant Normalization →Left alignment
- 14:52, 19 May 2014 diff hist -243 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:44, 19 May 2014 diff hist -279 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:26, 19 May 2014 diff hist +108 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:18, 19 May 2014 diff hist +59 Variant Normalization →Parsimony
- 14:17, 19 May 2014 diff hist +1 Variant Normalization →Left alignment
- 14:16, 19 May 2014 diff hist +278 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:06, 19 May 2014 diff hist +408 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 13:54, 19 May 2014 diff hist +5 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:47, 19 May 2014 diff hist -29 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:46, 19 May 2014 diff hist -94 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:44, 19 May 2014 diff hist +3 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:36, 19 May 2014 diff hist +408 Variant Normalization →Left alignment
- 12:20, 19 May 2014 diff hist -3 Variant Normalization →Left alignment
- 12:20, 19 May 2014 diff hist +32 Variant Normalization →Parsimony
- 12:19, 19 May 2014 diff hist +48 Variant Normalization →Parsimony
- 12:18, 19 May 2014 diff hist +73 Variant Normalization →Parsimony
- 12:14, 19 May 2014 diff hist +54 Variant Normalization →Normalization
- 12:13, 19 May 2014 diff hist -56 Variant Normalization →Introduction
- 12:12, 19 May 2014 diff hist +157 Variant Normalization →Introduction
- 12:10, 19 May 2014 diff hist +333 Variant Normalization →Introduction
- 12:03, 19 May 2014 diff hist +2 Variant Normalization →Introduction
- 15:23, 15 May 2014 diff hist +107 Vt →Updating
- 10:02, 9 May 2014 diff hist +458 Vt →Common options
- 16:15, 7 May 2014 diff hist +864 Vt →Filters
- 16:12, 7 May 2014 diff hist +58 Vt →Filters
- 08:37, 28 April 2014 diff hist -11 Vt →Compute Features
- 08:36, 28 April 2014 diff hist +1,136 Vt →Annotate Variants
- 17:33, 14 April 2014 diff hist 0 File:Normalization mnp.png Atks uploaded a new version of "File:Normalization mnp.png" current
- 17:32, 14 April 2014 diff hist 0 File:Normalization mnp.png Atks uploaded a new version of "File:Normalization mnp.png"
- 11:45, 27 March 2014 diff hist +9 Vt →Updating
- 11:45, 27 March 2014 diff hist +76 Vt →Updating
- 21:10, 28 February 2014 diff hist -1 Vt →Annotate Variants
- 21:09, 28 February 2014 diff hist +82 Vt →Updating
- 21:09, 28 February 2014 diff hist +8 Vt →Updating
- 21:08, 28 February 2014 diff hist +127 Vt →Installation
- 21:06, 28 February 2014 diff hist -139 Vt →Annotate Variants
- 21:06, 28 February 2014 diff hist +14 Vt →Annotate Variants
- 21:05, 28 February 2014 diff hist +26 Vt →Annotate Variants
- 21:05, 28 February 2014 diff hist +82 Vt →Resource Bundle
- 21:02, 28 February 2014 diff hist +9 Vt →Annotate Variants
- 18:23, 20 February 2014 diff hist +47 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:19, 20 February 2014 diff hist +28 Analyses of Indels →to document
- 18:16, 20 February 2014 diff hist +261 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:10, 20 February 2014 diff hist +304 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:06, 20 February 2014 diff hist +75 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:01, 20 February 2014 diff hist +37 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 16:45, 20 February 2014 diff hist -398 Analyses of Indels
- 16:42, 20 February 2014 diff hist +113 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 16:40, 20 February 2014 diff hist +1,495 Analyses of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 16:31, 20 February 2014 diff hist +48 Analyses of Indels →Coding regions
- 16:27, 20 February 2014 diff hist +629 Analyses of Indels →Coding regions
- 16:22, 20 February 2014 diff hist +794 Analyses of Indels →Normalization
- 16:19, 20 February 2014 diff hist +212 Analyses of Indels →Coding regions
- 16:17, 20 February 2014 diff hist +57 Analyses of Indels →Normalization
- 16:15, 20 February 2014 diff hist +464 Analyses of Indels →Normalization
- 16:10, 20 February 2014 diff hist +110 Analyses of Indels →Peek
- 15:38, 20 February 2014 diff hist +876 Analyses of Indels →Analyses
- 15:27, 20 February 2014 diff hist +864 Analyses of Indels →Analyses
- 15:01, 20 February 2014 diff hist +57 Analyses of Indels →Coding regions
- 15:29, 19 February 2014 diff hist 0 Analyses of Indels →Normalization
- 15:26, 19 February 2014 diff hist +12 Analyses of Indels
- 15:26, 19 February 2014 diff hist +5 Analyses of Indels
- 15:25, 19 February 2014 diff hist +6 Analyses of Indels →Tools
- 15:24, 19 February 2014 diff hist -18 Analyses of Indels →Motivation
- 15:19, 19 February 2014 diff hist -1 Variant Normalization →Parsimony
- 15:18, 19 February 2014 diff hist +55 Analyses of Indels →Normalization
- 15:17, 19 February 2014 diff hist +11 Analyses of Indels →Normalization
- 15:15, 19 February 2014 diff hist +743 Analyses of Indels →Normalization
- 15:08, 19 February 2014 diff hist +5 Analyses of Indels →Normalization
- 15:07, 19 February 2014 diff hist +566 Analyses of Indels →Normalization
- 12:16, 19 February 2014 diff hist +1,363 N Analyses of Indels Created page with "=Motivation= This wiki page will details the useful steps in analysing Indels. In particular it is to help the group in understanding the issues and perform the analyses qui..."
- 16:04, 18 February 2014 diff hist 0 Vt →Profile Indels
- 16:03, 18 February 2014 diff hist -14 Vt →Profile Indels
- 10:12, 18 February 2014 diff hist -131 Vt →Installation
- 16:18, 13 February 2014 diff hist +9 Vt →Filters
- 15:48, 13 February 2014 diff hist +160 Vt →Filters
- 15:46, 13 February 2014 diff hist -2 Vt →Filters
- 15:46, 13 February 2014 diff hist -2 Vt →Filters
- 15:45, 13 February 2014 diff hist -61 Vt →Filters
- 17:31, 4 February 2014 diff hist +669 Vt →Uncompressed BCF streams
- 16:29, 30 January 2014 diff hist +103 Vt →Profile Indels
- 14:23, 30 January 2014 diff hist +15 Vt →Profile NA12878
- 14:20, 30 January 2014 diff hist +1,034 Vt →Profile NA12878
- 14:20, 30 January 2014 diff hist -1,035 Vt →Profile Mendelian Errors
- 14:20, 30 January 2014 diff hist +1,035 Vt →Profile Mendelian Errors
- 14:14, 30 January 2014 diff hist +2,079 Vt →Profile Mendelian Errors
- 16:36, 29 January 2014 diff hist +4 Vt →Inspection and Evaluation
- 16:35, 29 January 2014 diff hist +29 Vt →Peek
- 16:34, 29 January 2014 diff hist +2 Vt →VCF Manipulation
- 16:33, 29 January 2014 diff hist +62 Vt →Concatenate
- 15:45, 29 January 2014 diff hist +5 Vt →Profile Mendelian Errors
- 15:44, 29 January 2014 diff hist -1 Vt →Profile Mendelian Errors
- 15:44, 29 January 2014 diff hist +20 Vt →Profile Mendelian Errors
- 15:44, 29 January 2014 diff hist +6 Vt →Profile Mendelian Errors
- 15:42, 29 January 2014 diff hist 0 N File:Mendel.pdf current
- 15:41, 29 January 2014 diff hist +15 Vt →Profile Mendelian Errors
- 15:39, 29 January 2014 diff hist +99 Vt →Profile Mendelian Errors
- 15:34, 29 January 2014 diff hist -127 Vt →Profile Mendelian Errors
- 15:21, 29 January 2014 diff hist +2,869 Vt →Profile Indels
- 09:36, 29 January 2014 diff hist +622 Vt →VCF Manipulation
- 12:27, 24 January 2014 diff hist +553 Vt →Annotate Variants
- 12:15, 24 January 2014 diff hist +557 Vt →Peek
- 12:03, 24 January 2014 diff hist +1,396 Vt →Profile Indels
- 12:00, 24 January 2014 diff hist +197 Vt →Profile Indels
- 11:57, 24 January 2014 diff hist +746 Vt →Profile Indels
- 11:49, 24 January 2014 diff hist +1,968 Vt →Peek
- 16:12, 23 January 2014 diff hist +7 Vt →Installation
- 15:43, 23 January 2014 diff hist -179 Vt →Normalization
- 15:35, 23 January 2014 diff hist -130 Vt →Normalization
- 15:32, 23 January 2014 diff hist +964 Vt →Normalization
- 15:25, 23 January 2014 diff hist -12 Vt →Normalization
- 14:55, 23 January 2014 diff hist +109 Vt →Normalization
- 14:51, 23 January 2014 diff hist +332 Vt →Normalization
- 13:33, 23 January 2014 diff hist -15 Vt →Normalization
- 13:31, 23 January 2014 diff hist +127 Vt →Installation
- 18:30, 14 January 2014 diff hist +519 Vt →Peek
- 08:19, 10 January 2014 diff hist -18 Vt →Peek
- 17:51, 7 January 2014 diff hist +10 Vt
- 17:35, 3 January 2014 diff hist +143 Vt →View
- 13:21, 3 January 2014 diff hist +82 Vt →Common options
- 13:19, 3 January 2014 diff hist +25 Vt →Uncompressed BCF streams
- 15:42, 2 January 2014 diff hist -1 Vt →Uncompressed BCF streams
- 15:41, 2 January 2014 diff hist +8 Vt →Uncompressed BCF streams
- 15:38, 2 January 2014 diff hist -9 Vt →Uncompressed BCF streams
- 15:38, 2 January 2014 diff hist +621 Vt →Alternate headers