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Jump to navigationJump to search- 18:13, 5 September 2014 diff hist +30 Variant classification →Complex Multiallelic Examples
- 18:12, 5 September 2014 diff hist +3 Variant classification →Complex Biallelic Examples
- 18:11, 5 September 2014 diff hist +2 Variant classification →Complex Biallelic Examples
- 18:11, 5 September 2014 diff hist +1 Variant classification →Simple Biallelic Examples
- 18:11, 5 September 2014 diff hist +73 Variant classification →Legend for examples
- 18:10, 5 September 2014 diff hist +34 Variant classification →Simple Multiallelic Examples
- 18:09, 5 September 2014 diff hist +84 Variant classification →Complex Biallelic Examples
- 18:07, 5 September 2014 diff hist +87 Variant classification →Simple Biallelic Examples
- 18:07, 5 September 2014 diff hist +346 Variant classification →Examples
- 18:04, 5 September 2014 diff hist +5 Variant classification →Simple Biallelic Examples
- 18:03, 5 September 2014 diff hist +22 Variant classification →Structured Variants Examples
- 18:02, 5 September 2014 diff hist +86 Variant classification →Complex Multiallelic Examples
- 17:57, 5 September 2014 diff hist +81 Variant classification →Simple Multiallelic Examples
- 17:55, 5 September 2014 diff hist +57 Variant classification →Complex Biallelic Examples
- 17:52, 5 September 2014 diff hist 0 Variant classification →Simple Biallelic Examples
- 17:52, 5 September 2014 diff hist +3 Variant classification →Simple Biallelic Examples
- 17:51, 5 September 2014 diff hist +17 Variant classification →Simple Biallelic Examples
- 15:12, 5 September 2014 diff hist +17 Variant classification →SV Examples
- 14:27, 5 September 2014 diff hist -122 Variant classification →Output
- 14:17, 5 September 2014 diff hist +260 Vt →Sorting
- 13:41, 5 September 2014 diff hist +91 Variant classification →Maintained by
- 12:27, 5 September 2014 diff hist -36 Variant classification →Output
- 11:43, 5 September 2014 diff hist -117 Variant classification →Output
- 11:39, 5 September 2014 diff hist -42 Variant classification →SV Examples
- 11:36, 5 September 2014 diff hist 0 Vt →Normalization
- 11:34, 5 September 2014 diff hist +112 Vt →Peek
- 11:33, 5 September 2014 diff hist +61 Variant classification →Definitions
- 11:32, 5 September 2014 diff hist +49 Variant classification →Output
- 11:24, 5 September 2014 diff hist -462 Variant classification →Output
- 11:23, 5 September 2014 diff hist +3,304 Variant classification →Output
- 11:21, 5 September 2014 diff hist +76 Variant classification →Complex Biallelic Examples
- 11:20, 5 September 2014 diff hist +2 Variant classification →Simple Multiallelic Examples
- 11:19, 5 September 2014 diff hist +2 Variant classification →SV Examples
- 11:19, 5 September 2014 diff hist +2 Variant classification →Complex Multiallelic Examples
- 11:19, 5 September 2014 diff hist +2 Variant classification →Complex Biallelic Examples
- 11:19, 5 September 2014 diff hist +94 Variant classification →Simple Biallelic Examples
- 11:18, 5 September 2014 diff hist +172 Variant classification →Complex Multiallelic Examples
- 11:16, 5 September 2014 diff hist +215 Variant classification →SV Examples
- 11:10, 5 September 2014 diff hist +1,083 Variant classification →Complex Multiallelic Examples
- 11:08, 5 September 2014 diff hist -2 Variant classification →Complex Multiallelic Examples
- 11:08, 5 September 2014 diff hist +131 Variant classification →Complex Multiallelic Examples
- 11:05, 5 September 2014 diff hist +119 Variant classification →Complex Multiallelic Examples
- 11:03, 5 September 2014 diff hist +9 Variant classification →Simple Biallelic Examples
- 11:02, 5 September 2014 diff hist -21 Variant classification →Definitions
- 11:02, 5 September 2014 diff hist +3 Variant classification →Simple Biallelic Examples
- 10:52, 5 September 2014 diff hist +2 Variant classification →Simple Biallelic Examples
- 10:52, 5 September 2014 diff hist +78 Variant classification →Complex Multiallelic Examples
- 10:50, 5 September 2014 diff hist +71 Variant classification →Complex Examples
- 10:49, 5 September 2014 diff hist +9 Variant classification →Simple Examples
- 10:49, 5 September 2014 diff hist +354 Variant classification →Complex Examples
- 10:46, 5 September 2014 diff hist +232 Variant classification →Example
- 10:43, 5 September 2014 diff hist +55 Variant classification →Example
- 10:25, 5 September 2014 diff hist +9 Variant classification →Definitions
- 10:25, 5 September 2014 diff hist +623 Variant classification →Definitions
- 10:15, 5 September 2014 diff hist -2 Variant classification →Definitions
- 10:13, 5 September 2014 diff hist +4,628 Variant classification →Definitions
- 10:07, 5 September 2014 diff hist +695 N Variant classification Created page with "= Introduction = The Variant Call Format (VCF) is a flexible file format specification that allows us to represent many different variant types ranging from SNPs, indels to c..."
- 10:03, 5 September 2014 diff hist -2 Vt →Peek
- 16:58, 28 August 2014 diff hist +2,133 Vt →Peek
- 09:29, 12 August 2014 diff hist 0 File:Normalization str.png Atks uploaded a new version of "File:Normalization str.png" current
- 03:32, 17 June 2014 diff hist -25 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Records
- 03:15, 17 June 2014 diff hist +15 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Summary
- 03:13, 17 June 2014 diff hist -60 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Normalization
- 16:47, 16 June 2014 diff hist -16 Sequencing Workshop Analysis of Indels →Normalization current
- 16:46, 16 June 2014 diff hist -172 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 16:34, 16 June 2014 diff hist -6 Sequencing Workshop Analysis of Indels →Summary
- 16:20, 16 June 2014 diff hist -9 Sequencing Workshop Analysis of Indels →Summary
- 16:19, 16 June 2014 diff hist -1 Sequencing Workshop Analysis of Indels →Header
- 16:19, 16 June 2014 diff hist -16 Vt →Compute Features
- 16:17, 16 June 2014 diff hist +1,365 Vt →Compute Features
- 16:13, 16 June 2014 diff hist +214 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 16:06, 16 June 2014 diff hist -4 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 16:05, 16 June 2014 diff hist 0 Sequencing Workshop Analysis of Indels →Records
- 16:05, 16 June 2014 diff hist -4 Sequencing Workshop Analysis of Indels →Records
- 15:52, 16 June 2014 diff hist +664 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 15:44, 16 June 2014 diff hist +21 Sequencing Workshop Analysis of Indels →Records
- 15:43, 16 June 2014 diff hist +1 Sequencing Workshop Analysis of Indels →Records
- 15:42, 16 June 2014 diff hist +243 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 09:14, 16 June 2014 diff hist +50 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 22:12, 15 June 2014 diff hist +388 Sequencing Workshop Analysis of Indels →Summary
- 22:06, 15 June 2014 diff hist -24 Sequencing Workshop Analysis of Indels →Normalization
- 22:00, 15 June 2014 diff hist -144 Sequencing Workshop Analysis of Indels →Normalization
- 21:59, 15 June 2014 diff hist -451 Sequencing Workshop Analysis of Indels →to document
- 21:58, 15 June 2014 diff hist +235 Sequencing Workshop Analysis of Indels →Normalization
- 21:55, 15 June 2014 diff hist +1,460 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 21:52, 15 June 2014 diff hist -2,981 Sequencing Workshop Analysis of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 21:50, 15 June 2014 diff hist -982 Sequencing Workshop Analysis of Indels →Peek
- 21:50, 15 June 2014 diff hist +23 Sequencing Workshop Analysis of Indels →Comparison with other data sets
- 21:48, 15 June 2014 diff hist +1,052 Sequencing Workshop Analysis of Indels →Summary
- 21:43, 15 June 2014 diff hist -3 Sequencing Workshop Analysis of Indels →Summary
- 21:38, 15 June 2014 diff hist +82 Sequencing Workshop Analysis of Indels →Summary
- 21:37, 15 June 2014 diff hist +2 Sequencing Workshop Analysis of Indels →Analysis
- 21:33, 15 June 2014 diff hist -6 Sequencing Workshop Analysis of Indels →GENOTYPE field
- 21:32, 15 June 2014 diff hist +96 Sequencing Workshop Analysis of Indels →INFO field
- 20:44, 15 June 2014 diff hist 0 Sequencing Workshop Analysis of Indels →Records
- 20:43, 15 June 2014 diff hist -2,029 Sequencing Workshop Analysis of Indels →Analyses
- 20:42, 15 June 2014 diff hist +144 Sequencing Workshop Analysis of Indels →GENOTYPE field
- 20:37, 15 June 2014 diff hist +100 Sequencing Workshop Analysis of Indels →INFO field
- 20:33, 15 June 2014 diff hist -955 Sequencing Workshop Analysis of Indels →File Preparation
- 20:24, 15 June 2014 diff hist -52 Sequencing Workshop Analysis of Indels →Tools
- 20:23, 15 June 2014 diff hist +417 Sequencing Workshop Analysis of Indels →GENOTYPE field
- 20:20, 15 June 2014 diff hist +30 Sequencing Workshop Analysis of Indels →Records
- 20:13, 15 June 2014 diff hist +862 Sequencing Workshop Analysis of Indels →Records
- 20:07, 15 June 2014 diff hist +624 Sequencing Workshop Analysis of Indels →Records
- 19:56, 15 June 2014 diff hist -725 Sequencing Workshop Analysis of Indels
- 19:39, 15 June 2014 diff hist +534 Sequencing Workshop Analysis of Indels →Motivation
- 18:12, 15 June 2014 diff hist +68 Analyses of Indels →Motivation current
- 18:12, 15 June 2014 diff hist +3,725 Sequencing Workshop Analysis of Indels →Tools
- 18:12, 15 June 2014 diff hist -3,724 Analyses of Indels →Anatomy of all.genotypes.bcf
- 18:10, 15 June 2014 diff hist -420 Sequencing Workshop Analysis of Indels →Insertion/Deletion ratios, Coding Regions and Overlap analysis
- 18:08, 15 June 2014 diff hist +1,288 Sequencing Workshop Analysis of Indels →Peek
- 17:51, 15 June 2014 diff hist +2,586 Sequencing Workshop Analysis of Indels →File Preparation
- 17:50, 15 June 2014 diff hist +8,821 N Sequencing Workshop Analysis of Indels Created page with "=Motivation= This wiki page details some standard Indel analyses which hopefully can help the group in understanding the issues and perform the analyses quickly without reinv..."
- 17:41, 15 June 2014 diff hist +362 Analyses of Indels →Analyses
- 17:35, 15 June 2014 diff hist +3,649 Analyses of Indels
- 17:51, 12 June 2014 diff hist +8 Vt →Partition
- 17:51, 12 June 2014 diff hist -1 Vt →Partition
- 17:44, 12 June 2014 diff hist +1,326 Vt →Annotate Variants
- 10:23, 3 June 2014 diff hist -10 Vt →Installation
- 10:22, 3 June 2014 diff hist +2 Vt →Installation
- 09:36, 27 May 2014 diff hist +1 Variant Normalization →22 May 2014
- 11:12, 26 May 2014 diff hist +114 Variant Normalization →22 May 2014
- 11:09, 26 May 2014 diff hist -5 Variant Normalization →Introduction
- 16:23, 22 May 2014 diff hist +12 Variant Normalization →Left alignment
- 16:23, 22 May 2014 diff hist +12 Variant Normalization →Parsimony
- 09:21, 22 May 2014 diff hist +63 Variant Normalization →Introduction
- 08:03, 22 May 2014 diff hist -5 Variant Normalization →22 May 2014
- 08:02, 22 May 2014 diff hist -21 Variant Normalization →22 May 2014
- 08:02, 22 May 2014 diff hist +22 Variant Normalization →20 May 2014
- 08:01, 22 May 2014 diff hist -21 Variant Normalization →20 May 2014
- 07:59, 22 May 2014 diff hist +1,239 Variant Normalization →Comparisons
- 17:27, 21 May 2014 diff hist +3 Variant Normalization →Algorithm for Normalization
- 17:26, 21 May 2014 diff hist +4 Variant Normalization →Corollary
- 17:26, 21 May 2014 diff hist -59 Variant Normalization →Lemma
- 17:23, 21 May 2014 diff hist +32 Variant Normalization →Lemma
- 17:20, 21 May 2014 diff hist +1 Variant Normalization →Left alignment
- 17:18, 21 May 2014 diff hist +177 Variant Normalization →Parsimony
- 17:13, 21 May 2014 diff hist +4 Variant Normalization →Introduction
- 08:28, 21 May 2014 diff hist +79 Variant Normalization →Comparisons
- 17:59, 20 May 2014 diff hist +1 Variant Normalization →Comparison
- 17:59, 20 May 2014 diff hist -50 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:58, 20 May 2014 diff hist -3 Variant Normalization →Normalization
- 17:58, 20 May 2014 diff hist -784 Variant Normalization →Algorithm for Normalization
- 17:57, 20 May 2014 diff hist +786 Variant Normalization →Implementation
- 17:57, 20 May 2014 diff hist +22 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:56, 20 May 2014 diff hist +80 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:56, 20 May 2014 diff hist -100 Variant Normalization →Implementation
- 17:56, 20 May 2014 diff hist -2 Variant Normalization →When is a variant normalized?
- 17:50, 20 May 2014 diff hist +40 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:42, 20 May 2014 diff hist +14 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:11, 20 May 2014 diff hist +78 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:05, 20 May 2014 diff hist +10 Variant Normalization →Why you should use the implementation of normalization in vt
- 17:03, 20 May 2014 diff hist -68 Variant Normalization →Algorithm for Normalization
- 17:02, 20 May 2014 diff hist +114 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:59, 20 May 2014 diff hist -4 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:57, 20 May 2014 diff hist +218 Variant Normalization →Why you should use the implementation of normalization in vt
- 16:53, 20 May 2014 diff hist +5 Variant Normalization →Why you should use vt's implementation of normalization
- 16:52, 20 May 2014 diff hist +59 Variant Normalization →Why you should use vt's implementation of normalization
- 16:51, 20 May 2014 diff hist +38 Variant Normalization →Why you should use vt's implementation of normalization
- 16:50, 20 May 2014 diff hist 0 Variant Normalization →Why you should use vt's implementation of normalization
- 16:46, 20 May 2014 diff hist +121 Variant Normalization →Why you should use vt's implementation of normalization
- 16:41, 20 May 2014 diff hist +32 Variant Normalization →Why you should use vt's implementation of normalization
- 16:40, 20 May 2014 diff hist +3 Variant Normalization →Is a variant normalized?
- 16:40, 20 May 2014 diff hist -11 Variant Normalization
- 16:39, 20 May 2014 diff hist +11 Variant Normalization →Why you should use vt's implementation of normalization
- 16:38, 20 May 2014 diff hist +87 Variant Normalization →Why you should use vt's implementation of normalization
- 16:37, 20 May 2014 diff hist +1 Variant Normalization →Maintained by
- 16:37, 20 May 2014 diff hist -2 Variant Normalization →Why you should use vt's implementation of normalization
- 16:36, 20 May 2014 diff hist +376 Variant Normalization →Implementation
- 12:56, 20 May 2014 diff hist +41 Variant Normalization →Corollary
- 12:51, 20 May 2014 diff hist +8 Variant Normalization →Introduction
- 12:42, 20 May 2014 diff hist +3 Variant Normalization →Left alignment
- 12:42, 20 May 2014 diff hist +17 Variant Normalization →Left alignment
- 09:51, 20 May 2014 diff hist +5 Variant Normalization →Introduction
- 09:50, 20 May 2014 diff hist +3 Variant Normalization →Normalization
- 20:00, 19 May 2014 diff hist -56 Variant Normalization →Algorithm for Normalization
- 19:59, 19 May 2014 diff hist -3 Variant Normalization →Corollary
- 19:58, 19 May 2014 diff hist +5 Variant Normalization →Lemma
- 19:58, 19 May 2014 diff hist +4 Variant Normalization →Parsimony
- 19:58, 19 May 2014 diff hist +5 Variant Normalization →Left alignment
- 19:57, 19 May 2014 diff hist +4 Variant Normalization →Left alignment
- 19:56, 19 May 2014 diff hist -77 Variant Normalization →Normalization
- 19:55, 19 May 2014 diff hist +7 Variant Normalization →Introduction
- 19:54, 19 May 2014 diff hist -46 Variant Normalization →Introduction
- 19:52, 19 May 2014 diff hist +14 Variant Normalization →Introduction
- 19:52, 19 May 2014 diff hist +2 Variant Normalization →Introduction
- 19:50, 19 May 2014 diff hist +34 Variant Normalization →Corollary
- 19:48, 19 May 2014 diff hist +821 Variant Normalization →Is a variant normalized?
- 19:36, 19 May 2014 diff hist +24 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 19:32, 19 May 2014 diff hist +70 Variant Normalization →Normalization
- 19:31, 19 May 2014 diff hist +90 Variant Normalization →Left alignment
- 19:30, 19 May 2014 diff hist +76 Variant Normalization →Normalization
- 19:29, 19 May 2014 diff hist +21 Variant Normalization →Left alignment
- 19:28, 19 May 2014 diff hist +1 Variant Normalization →Left alignment
- 19:28, 19 May 2014 diff hist +87 Variant Normalization →Left alignment
- 19:27, 19 May 2014 diff hist +112 Variant Normalization →Left alignment
- 19:26, 19 May 2014 diff hist -9 Variant Normalization →Left alignment
- 19:25, 19 May 2014 diff hist -4 Variant Normalization →Left alignment
- 19:25, 19 May 2014 diff hist +322 Variant Normalization →Left alignment
- 19:22, 19 May 2014 diff hist +1 Variant Normalization →Parsimony
- 19:22, 19 May 2014 diff hist +4 Variant Normalization →Left alignment
- 16:23, 19 May 2014 diff hist +118 Variant Normalization →Parsimony
- 16:19, 19 May 2014 diff hist +1 Variant Normalization →Parsimony
- 16:16, 19 May 2014 diff hist -12 Variant Normalization →Parsimony
- 16:16, 19 May 2014 diff hist +199 Variant Normalization →Parsimony
- 16:11, 19 May 2014 diff hist +31 Variant Normalization →Algorithm for Normalization
- 16:10, 19 May 2014 diff hist +2 Variant Normalization →Algorithm for Normalization
- 16:10, 19 May 2014 diff hist -67 Variant Normalization →Algorithm for Normalization
- 16:09, 19 May 2014 diff hist 0 Variant Normalization →Algorithm for Normalization
- 16:08, 19 May 2014 diff hist +10 Variant Normalization →Algorithm for Normalization
- 16:07, 19 May 2014 diff hist +680 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 15:58, 19 May 2014 diff hist +283 Variant Normalization →Algorithm for Normalization
- 15:53, 19 May 2014 diff hist +29 Variant Normalization →Left alignment
- 15:52, 19 May 2014 diff hist 0 File:Normalization str.png Atks uploaded a new version of "File:Normalization str.png"
- 15:46, 19 May 2014 diff hist +57 Variant Normalization →Parsimony
- 15:43, 19 May 2014 diff hist +32 Variant Normalization →Parsimony
- 15:42, 19 May 2014 diff hist 0 Variant Normalization →Parsimony
- 15:41, 19 May 2014 diff hist +47 Variant Normalization →Parsimony
- 15:17, 19 May 2014 diff hist -2 Variant Normalization →Left alignment
- 15:16, 19 May 2014 diff hist +11 Variant Normalization →Left alignment
- 15:14, 19 May 2014 diff hist -228 Variant Normalization →Left alignment
- 15:05, 19 May 2014 diff hist +3 Variant Normalization →Parsimony
- 15:03, 19 May 2014 diff hist -1 Variant Normalization →Introduction
- 15:03, 19 May 2014 diff hist -51 Variant Normalization →Introduction
- 15:01, 19 May 2014 diff hist +27 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:59, 19 May 2014 diff hist -2 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:55, 19 May 2014 diff hist +132 Variant Normalization →Left alignment
- 14:52, 19 May 2014 diff hist -243 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:44, 19 May 2014 diff hist -279 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:26, 19 May 2014 diff hist +108 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:18, 19 May 2014 diff hist +59 Variant Normalization →Parsimony
- 14:17, 19 May 2014 diff hist +1 Variant Normalization →Left alignment
- 14:16, 19 May 2014 diff hist +278 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 14:06, 19 May 2014 diff hist +408 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 13:54, 19 May 2014 diff hist +5 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:47, 19 May 2014 diff hist -29 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:46, 19 May 2014 diff hist -94 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:44, 19 May 2014 diff hist +3 Variant Normalization →How to observe that a variant is not left aligned or parsimonious on the right side?
- 12:36, 19 May 2014 diff hist +408 Variant Normalization →Left alignment
- 12:20, 19 May 2014 diff hist -3 Variant Normalization →Left alignment
- 12:20, 19 May 2014 diff hist +32 Variant Normalization →Parsimony
- 12:19, 19 May 2014 diff hist +48 Variant Normalization →Parsimony
- 12:18, 19 May 2014 diff hist +73 Variant Normalization →Parsimony
- 12:14, 19 May 2014 diff hist +54 Variant Normalization →Normalization
- 12:13, 19 May 2014 diff hist -56 Variant Normalization →Introduction
- 12:12, 19 May 2014 diff hist +157 Variant Normalization →Introduction
- 12:10, 19 May 2014 diff hist +333 Variant Normalization →Introduction
- 12:03, 19 May 2014 diff hist +2 Variant Normalization →Introduction
- 15:23, 15 May 2014 diff hist +107 Vt →Updating
- 10:02, 9 May 2014 diff hist +458 Vt →Common options