User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 18:19, 11 January 2023 diff hist +3 Triodenovo →Filtering current
- 02:37, 7 March 2019 diff hist 0 N File:Triodenovo.0.06.tar.gz current
- 02:37, 7 March 2019 diff hist 0 Triodenovo →Download
- 02:37, 7 March 2019 diff hist 0 Triodenovo →Download
- 02:37, 7 March 2019 diff hist 0 Triodenovo →Update
- 03:04, 5 March 2019 diff hist 0 File:Triodenovo.0.04.tar.gz Bingshan uploaded a new version of File:Triodenovo.0.04.tar.gz current
- 03:03, 5 March 2019 diff hist 0 Triodenovo →Download
- 03:03, 5 March 2019 diff hist 0 Triodenovo →Update
- 23:54, 10 November 2016 diff hist +18 Polymutt2 →File format current
- 23:52, 10 November 2016 diff hist +81 Polymutt2
- 10:22, 26 October 2016 diff hist -1,101 Bayesdenovo →Filtering current
- 10:21, 26 October 2016 diff hist +1 Bayesdenovo →Filtering
- 15:51, 25 October 2016 diff hist +24 Bayesdenovo →Input files
- 15:50, 25 October 2016 diff hist +324 Bayesdenovo →Input files
- 12:38, 25 October 2016 diff hist +674 Bayesdenovo
- 12:34, 25 October 2016 diff hist +222 Bayesdenovo →Introduction
- 12:31, 25 October 2016 diff hist 0 N File:Bayesdenovo.0.01.tar.gz current
- 12:30, 25 October 2016 diff hist -972 Bayesdenovo
- 12:25, 25 October 2016 diff hist +7,281 N Bayesdenovo Created page with "== Update == v0.01 is available for download == Compilation == * After downloading the source code, unzip and untar it, and cd bayesdenovo, and then type Make..."
- 13:36, 6 September 2016 diff hist -16 Idriver →Introduction current
- 13:34, 6 September 2016 diff hist +3 Idriver
- 13:32, 6 September 2016 diff hist +254 Idriver
- 13:30, 6 September 2016 diff hist +7 Idriver
- 13:29, 6 September 2016 diff hist 0 Idriver
- 13:28, 6 September 2016 diff hist 0 Idriver
- 13:28, 6 September 2016 diff hist 0 N File:IDriverV0.1.zip current
- 13:26, 6 September 2016 diff hist -1 Idriver
- 13:26, 6 September 2016 diff hist 0 N File:IDriver 0810.zip current
- 13:24, 6 September 2016 diff hist +279 N Idriver Created page with " == Download == Source code of v0.1 download here. == Contact == For questions please contact the authors (Hai Yang: [mailto:hai.yang@vanderbilt.edu h..."
- 18:19, 20 June 2016 diff hist -261 Triodenovo →Usage
- 18:11, 20 June 2016 diff hist +351 Triodenovo
- 18:08, 20 June 2016 diff hist -200 Triodenovo
- 18:08, 20 June 2016 diff hist 0 Triodenovo →Update
- 18:07, 20 June 2016 diff hist 0 N File:Triodenovo.0.05.tar.gz current
- 18:07, 20 June 2016 diff hist 0 Triodenovo →Download
- 14:28, 20 June 2016 diff hist +21 Triodenovo →Note
- 14:27, 20 June 2016 diff hist +179 Triodenovo
- 12:15, 7 April 2016 diff hist +103 Polymutt2
- 15:57, 15 February 2016 diff hist 0 File:Genetic map HapMapII GRCh37.tar.gz Bingshan uploaded a new version of "File:Genetic map HapMapII GRCh37.tar.gz" current
- 15:57, 15 February 2016 diff hist 0 File:Genetic map HapMapII GRCh37.tar.gz Bingshan uploaded a new version of "File:Genetic map HapMapII GRCh37.tar.gz"
- 02:49, 2 December 2015 diff hist +261 Triodenovo →Usage
- 21:05, 3 September 2015 diff hist 0 N File:Polymutt2 v0.2.tar.gz current
- 21:04, 3 September 2015 diff hist +1 Polymutt2 →Updates
- 21:04, 3 September 2015 diff hist +1 Polymutt2 →Download
- 11:32, 3 September 2015 diff hist +16 Polymutt2 →Contact
- 11:11, 6 July 2015 diff hist +115 Triodenovo →Input files
- 11:09, 6 July 2015 diff hist 0 Triodenovo →Usage
- 11:08, 6 July 2015 diff hist +307 Triodenovo
- 11:06, 6 July 2015 diff hist +2 Triodenovo →Note
- 23:34, 1 July 2015 diff hist +1 Polymutt2 →Usage
- 23:34, 1 July 2015 diff hist -1 Polymutt2 →Usage
- 23:33, 1 July 2015 diff hist +1 Polymutt2 →Examples of generating the map file
- 23:32, 1 July 2015 diff hist +581 Polymutt2 →Usage
- 23:30, 1 July 2015 diff hist +155 Polymutt2 →Usage
- 23:27, 1 July 2015 diff hist +345 Polymutt2 →Usage
- 23:21, 1 July 2015 diff hist +1 Polymutt2 →Usage
- 23:21, 1 July 2015 diff hist +1 Polymutt2 →Usage
- 23:21, 1 July 2015 diff hist +711 Polymutt2 →Usage
- 23:16, 1 July 2015 diff hist +67 Polymutt2 →Usage
- 23:14, 1 July 2015 diff hist +2 Polymutt2 →Usage
- 23:14, 1 July 2015 diff hist +4 Polymutt2 →Usage
- 23:13, 1 July 2015 diff hist +97 Polymutt2 →Usage
- 23:11, 1 July 2015 diff hist +344 Polymutt2
- 23:08, 1 July 2015 diff hist +53 Polymutt2 →Download
- 23:07, 1 July 2015 diff hist +33 Polymutt2 →Download
- 08:18, 26 March 2015 diff hist +2 GTDT →Input current
- 15:25, 9 January 2015 diff hist +4 GTDT →Introduction
- 18:41, 5 January 2015 diff hist +26 Triodenovo →Filtering
- 18:39, 5 January 2015 diff hist +32 Triodenovo →Filtering
- 18:39, 5 January 2015 diff hist -20 Triodenovo →Filtering
- 18:38, 5 January 2015 diff hist +8 Triodenovo →Filtering
- 18:38, 5 January 2015 diff hist +1,056 Triodenovo →Filtering
- 18:24, 5 January 2015 diff hist 0 Triodenovo →Filtering
- 01:34, 1 January 2015 diff hist 0 Triodenovo →Filtering
- 01:33, 1 January 2015 diff hist +93 Triodenovo →Filtering
- 01:29, 1 January 2015 diff hist +501 Triodenovo →Filtering
- 01:18, 1 January 2015 diff hist +223 Triodenovo →Usage
- 01:15, 1 January 2015 diff hist +105 Triodenovo →Introduction
- 01:08, 24 September 2014 diff hist +22 Triodenovo →Introduction
- 01:04, 24 September 2014 diff hist -94 Triodenovo →Download
- 00:54, 18 September 2014 diff hist +7 GTDT →Download
- 00:53, 18 September 2014 diff hist 0 N File:Gtdt.0.01.binary.gz current
- 00:51, 18 September 2014 diff hist -8 GTDT →Download
- 00:51, 18 September 2014 diff hist +84 GTDT →Download
- 00:44, 18 September 2014 diff hist 0 N File:Gtdt.0.01.tar.gz current
- 00:42, 18 September 2014 diff hist +81 GTDT
- 13:25, 4 September 2014 diff hist +569 GTDT →Input
- 13:20, 4 September 2014 diff hist -6 GTDT →Usage
- 13:19, 4 September 2014 diff hist +3 GTDT →Usage
- 13:19, 4 September 2014 diff hist +14 GTDT →Introduction
- 13:16, 4 September 2014 diff hist +1 GTDT →Input
- 12:14, 4 September 2014 diff hist +135 GTDT
- 12:13, 4 September 2014 diff hist +20 GTDT →Introduction
- 12:12, 4 September 2014 diff hist -20 GTDT →Output
- 12:12, 4 September 2014 diff hist +32 GTDT →Output
- 12:11, 4 September 2014 diff hist -4 GTDT →Output
- 12:11, 4 September 2014 diff hist -359 GTDT →Output
- 12:09, 4 September 2014 diff hist -4 GTDT →Output
- 12:08, 4 September 2014 diff hist +36 GTDT →Output
- 12:07, 4 September 2014 diff hist +27 GTDT →Output
- 12:06, 4 September 2014 diff hist +13 GTDT →Output
- 12:05, 4 September 2014 diff hist -69 GTDT →Output
- 12:01, 4 September 2014 diff hist +1 GTDT →Output
- 12:00, 4 September 2014 diff hist +454 GTDT →Output
- 11:58, 4 September 2014 diff hist -417 GTDT →Output
- 11:57, 4 September 2014 diff hist +105 GTDT →Introduction
- 11:56, 4 September 2014 diff hist +753 GTDT →Introduction
- 11:48, 4 September 2014 diff hist +114 GTDT →Output
- 11:47, 4 September 2014 diff hist 0 GTDT →Input
- 11:47, 4 September 2014 diff hist +5 GTDT →Output
- 11:46, 4 September 2014 diff hist 0 GTDT →Output
- 11:44, 4 September 2014 diff hist +5,088 N GTDT Created page with "== Introduction == == Usage == A command without any input will invoke triodenovo and display the following message The following parameters are available. Ones with "[]"..."
- 01:48, 27 May 2014 diff hist +16 Triodenovo
- 01:47, 27 May 2014 diff hist +44 Triodenovo
- 01:41, 27 May 2014 diff hist +16 Triodenovo →Contact
- 10:14, 27 April 2014 diff hist 0 N File:Polymutt.0.18.tar.gz current
- 10:12, 27 April 2014 diff hist -147 Polymutt →Download current
- 10:12, 27 April 2014 diff hist +100 Polymutt →Updates
- 01:01, 11 April 2014 diff hist 0 File:Polymutt2.0.1.tar.gz Bingshan uploaded a new version of "File:Polymutt2.0.1.tar.gz" current
- 01:01, 11 April 2014 diff hist +1 Polymutt2 →Download
- 00:56, 11 April 2014 diff hist 0 File:Polymutt2.0.1.tar.gz Bingshan uploaded a new version of "File:Polymutt2.0.1.tar.gz"
- 22:37, 10 April 2014 diff hist 0 File:Polymutt2.0.1.tar.gz Bingshan uploaded a new version of "File:Polymutt2.0.1.tar.gz"
- 22:03, 10 April 2014 diff hist 0 N File:Polymutt2.0.1.tar.gz
- 18:55, 10 April 2014 diff hist +15 Polymutt2 →Compilation
- 18:55, 10 April 2014 diff hist +12 Polymutt2 →Compilation
- 18:54, 10 April 2014 diff hist +80 Polymutt2 →Usage
- 18:53, 10 April 2014 diff hist +67 Polymutt2 →Usage
- 18:52, 10 April 2014 diff hist +1,028 Polymutt2
- 18:40, 10 April 2014 diff hist 0 N File:1000G.SNV.clean.MAF0.05.tbl.gz current
- 18:39, 10 April 2014 diff hist 0 N File:Genetic map HapMapII GRCh37.tar.gz
- 18:39, 10 April 2014 diff hist 0 N File:Polymutt2.0.1tar.gz current
- 18:39, 10 April 2014 diff hist +3 Polymutt2
- 18:38, 10 April 2014 diff hist +410 N Polymutt2 Created page with "== Updates == The latest version of 0.1 is available for Download. == Download == The latest version of source code v0.1 can be Media:Polymutt2.0.1tar.gz | ..."
- 00:32, 4 April 2014 diff hist +119 Triodenovo
- 00:31, 4 April 2014 diff hist +7 Polymutt
- 00:30, 4 April 2014 diff hist +8 Polymutt →NOTE
- 00:30, 4 April 2014 diff hist +18 Polymutt →NOTE
- 00:29, 4 April 2014 diff hist +1 Polymutt →NOTE
- 00:29, 4 April 2014 diff hist +18 Polymutt →NOTE
- 00:28, 4 April 2014 diff hist +324 Polymutt →Updates
- 00:25, 4 April 2014 diff hist -10 Triodenovo →Introduction
- 00:24, 4 April 2014 diff hist +8 Triodenovo →Filtering
- 00:23, 4 April 2014 diff hist -11 Triodenovo →Filtering
- 00:22, 4 April 2014 diff hist +443 Triodenovo →Filtering
- 23:46, 2 April 2014 diff hist +43 Triodenovo →Filtering
- 23:46, 2 April 2014 diff hist -15 Triodenovo →Options
- 23:45, 2 April 2014 diff hist -6 Triodenovo →Output fille
- 23:45, 2 April 2014 diff hist -5 Triodenovo →Introduction
- 23:45, 2 April 2014 diff hist +5 Triodenovo →Introduction
- 23:44, 2 April 2014 diff hist +30 Triodenovo →Introduction
- 23:43, 2 April 2014 diff hist +2,241 Triodenovo →Output fille
- 23:41, 2 April 2014 diff hist +178 Triodenovo →Introduction
- 23:39, 2 April 2014 diff hist +199 Triodenovo →Introduction
- 23:37, 2 April 2014 diff hist +242 Triodenovo →Usage
- 23:34, 2 April 2014 diff hist +227 Triodenovo
- 23:31, 2 April 2014 diff hist -21 Triodenovo →Input files
- 23:30, 2 April 2014 diff hist +50 Triodenovo →Input files
- 23:29, 2 April 2014 diff hist +354 Triodenovo
- 23:16, 2 April 2014 diff hist +216 Triodenovo
- 23:13, 2 April 2014 diff hist +669 Triodenovo
- 23:10, 2 April 2014 diff hist 0 Triodenovo
- 23:10, 2 April 2014 diff hist +367 Triodenovo
- 15:38, 2 April 2014 diff hist 0 N File:Triodenovo.0.04.tar.gz
- 15:37, 2 April 2014 diff hist 0 Triodenovo
- 18:51, 28 January 2014 diff hist 0 N File:Polymutt.0.17.tar.gz current
- 18:50, 28 January 2014 diff hist 0 Polymutt →Download
- 18:50, 28 January 2014 diff hist +91 Polymutt →Updates
- 18:42, 26 November 2013 diff hist -21 Polymutt →Usage
- 18:42, 26 November 2013 diff hist -49 Polymutt →Usage
- 11:22, 11 November 2013 diff hist 0 N File:Polymutt.0.16.tar.gz current
- 11:21, 11 November 2013 diff hist 0 Polymutt →Download
- 11:20, 11 November 2013 diff hist +33 Polymutt →Updates
- 11:19, 11 November 2013 diff hist +10 Polymutt →Updates
- 11:19, 11 November 2013 diff hist +2 Polymutt →Updates
- 11:19, 11 November 2013 diff hist +2 Polymutt →Updates
- 11:19, 11 November 2013 diff hist +6 Polymutt →Updates
- 11:18, 11 November 2013 diff hist +135 Polymutt →Updates
- 11:16, 11 November 2013 diff hist -146 Polymutt →Input files
- 18:49, 16 June 2013 diff hist 0 N File:Triodenovo.0.03.tar.gz current
- 18:47, 16 June 2013 diff hist 0 Triodenovo
- 18:47, 16 June 2013 diff hist 0 Triodenovo
- 18:25, 16 June 2013 diff hist 0 N File:Polymutt.0.15.tar.gz current
- 18:23, 16 June 2013 diff hist +8 Polymutt →Download
- 18:22, 16 June 2013 diff hist +136 Polymutt →Updates
- 01:47, 30 May 2013 diff hist 0 N File:Triodenovo.0.02.binary.tar.gz current
- 01:46, 30 May 2013 diff hist -1 Triodenovo
- 17:41, 16 May 2013 diff hist +17 QPLOT →Contact
- 17:41, 16 May 2013 diff hist +44 QPLOT →Contact
- 15:05, 15 May 2013 diff hist 0 N File:Triodenovo.0.02.tar.gz current
- 15:04, 15 May 2013 diff hist +16 Triodenovo
- 00:55, 8 May 2013 diff hist -21 Polymutt →Introduction
- 00:53, 8 May 2013 diff hist -159 Polymutt →Additional Notes
- 00:52, 8 May 2013 diff hist -250 Polymutt →Download
- 00:51, 8 May 2013 diff hist +30 Polymutt →Additional Notes
- 17:53, 16 April 2013 diff hist 0 File:Mutfilter.tar.gz uploaded a new version of "File:Mutfilter.tar.gz" current
- 02:17, 16 April 2013 diff hist +1 Polymutt →Updates
- 02:16, 16 April 2013 diff hist +13 Polymutt →Updates
- 02:16, 16 April 2013 diff hist +180 Polymutt →Updates
- 02:11, 16 April 2013 diff hist 0 N File:Polymutt.0.14.precompiled.tar.gz current
- 02:10, 16 April 2013 diff hist +5 Polymutt →Download
- 02:07, 16 April 2013 diff hist +250 Polymutt →Download
- 02:06, 16 April 2013 diff hist +241 Polymutt →Updates
- 01:06, 16 April 2013 diff hist 0 MutationFilter →6. Filter based on low Map Quality (LMQ): filtered if the percentage of reads carrying the mutant allele with low Map quality (defined as map quality below 10 via --low_mapq_cutoff) is >=15% current
- 01:04, 16 April 2013 diff hist 0 File:Mutfilter.tar.gz uploaded a new version of "File:Mutfilter.tar.gz"
- 13:38, 12 April 2013 diff hist -22 MutationFilter →Download
- 13:38, 12 April 2013 diff hist 0 N File:Mutfilter.tar.gz
- 13:38, 12 April 2013 diff hist +105 MutationFilter
- 12:01, 12 April 2013 diff hist +355 MutationFilter
- 14:34, 1 April 2013 diff hist +37 MutationFilter
- 14:31, 1 April 2013 diff hist -4 MutationFilter
- 14:31, 1 April 2013 diff hist +95 MutationFilter
- 14:28, 1 April 2013 diff hist +14 MutationFilter
- 14:28, 1 April 2013 diff hist +2 MutationFilter
- 14:28, 1 April 2013 diff hist +1,120 MutationFilter
- 14:17, 1 April 2013 diff hist +648 MutationFilter
- 14:12, 1 April 2013 diff hist +379 MutationFilter
- 14:08, 1 April 2013 diff hist +364 MutationFilter
- 14:04, 1 April 2013 diff hist +47 MutationFilter
- 14:02, 1 April 2013 diff hist +523 MutationFilter
- 13:58, 1 April 2013 diff hist +21 MutationFilter
- 13:58, 1 April 2013 diff hist +48 MutationFilter
- 13:56, 1 April 2013 diff hist +12 MutationFilter
- 13:56, 1 April 2013 diff hist -84 MutationFilter
- 13:53, 1 April 2013 diff hist +1,015 MutationFilter
- 13:38, 1 April 2013 diff hist +973 MutationFilter
- 13:32, 1 April 2013 diff hist +259 MutationFilter
- 13:28, 1 April 2013 diff hist +1,790 N MutationFilter Created page with ' == Introduction == * The tool '''mutfilter''' generates various diagnosis statistics based on sequence alignment and filters alignment artifacts based on user-provided criteria.…'
- 11:53, 29 March 2013 diff hist 0 File:Triodenovo.v0.01.tar.gz uploaded a new version of "File:Triodenovo.v0.01.tar.gz" current
- 11:52, 29 March 2013 diff hist 0 File:Triodenovo.v0.01.tar.gz uploaded a new version of "File:Triodenovo.v0.01.tar.gz"
- 11:49, 29 March 2013 diff hist 0 File:Triodenovo.tar.gz uploaded a new version of "File:Triodenovo.tar.gz" current
- 11:49, 29 March 2013 diff hist 0 N File:Triodenovo.v0.01.binary.tar.gz current
- 11:48, 29 March 2013 diff hist +13 Triodenovo
- 11:36, 29 March 2013 diff hist 0 N File:Triodenovo.v0.01.tar.gz
- 11:36, 29 March 2013 diff hist +10 Triodenovo
- 00:01, 28 March 2013 diff hist 0 N File:Triodenovo.gz current
- 00:00, 28 March 2013 diff hist -4 Triodenovo
- 23:59, 27 March 2013 diff hist +85 Triodenovo
- 14:30, 25 March 2013 diff hist 0 File:Triodenovo.tar.gz uploaded a new version of "File:Triodenovo.tar.gz"
- 13:41, 25 March 2013 diff hist 0 N File:Triodenovo.tar.gz
- 13:40, 25 March 2013 diff hist +45 N Triodenovo Created page with ' download here.'
- 12:42, 17 March 2013 diff hist 0 N File:Polymutt precompiled.tar.gz current
- 12:42, 17 March 2013 diff hist +85 Polymutt beta current
- 11:33, 14 March 2013 diff hist 0 N File:Polymutt.0.14.tar.gz current
- 11:31, 14 March 2013 diff hist +49 N Polymutt beta Created page with ' downloaded here.'
- 18:08, 28 February 2013 diff hist +3 BamPileup current
- 18:08, 28 February 2013 diff hist +40 BamPileup
- 18:07, 28 February 2013 diff hist 0 N File:BamPileup.tar.gz current
- 18:06, 28 February 2013 diff hist -4 BamPileup →Download
- 18:05, 28 February 2013 diff hist +30 BamPileup →Download
- 18:01, 28 February 2013 diff hist +432 N BamPileup Created page with '==Simple pileup tool to check the reads covering specific regions/sites ==Download== The following parameters are available. Ones with "[]" are in effect: Input Files : --b…'