User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 11:49, 19 October 2012 diff hist +9 EPACTS for DIAGRAM →A. Convert dosage file into VCF format
- 11:49, 19 October 2012 diff hist +94 EPACTS for DIAGRAM →A. Convert dosage file into VCF format
- 11:46, 19 October 2012 diff hist +59 EPACTS for DIAGRAM →A. Convert dosage file into VCF format
- 10:46, 19 October 2012 diff hist +32 EPACTS for DIAGRAM →A. Convert doseage file into VCF format
- 14:26, 16 October 2012 diff hist +113 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 22:30, 9 October 2012 diff hist +5 Minimac →Change log
- 22:19, 9 October 2012 diff hist +340 Minimac →using a MaCH reference panel
- 22:14, 9 October 2012 diff hist -11 Minimac →Multiprocessor Version
- 22:12, 9 October 2012 diff hist +87 Minimac →Download
- 19:14, 9 October 2012 diff hist +4 Minimac →Multiprocessor Version
- 19:13, 9 October 2012 diff hist +204 Minimac →Multiprocessor Version
- 16:21, 3 October 2012 diff hist +1 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 16:20, 3 October 2012 diff hist +3 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 16:19, 3 October 2012 diff hist +6 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 16:19, 3 October 2012 diff hist +536 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 16:09, 3 October 2012 diff hist +138 Minimac: 1000 Genomes Imputation Cookbook →Reference based chunking
- 16:04, 3 October 2012 diff hist +65 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
- 16:02, 3 October 2012 diff hist +368 Minimac Command Reference →Reference Haplotype Set
- 15:48, 3 October 2012 diff hist 0 Minimac →Change log
- 15:48, 3 October 2012 diff hist +70 Minimac →Download
- 21:36, 24 September 2012 diff hist -10 Test EPACTS for DIAGRAM →Download EPACTS
- 17:28, 24 September 2012 diff hist +37 Test EPACTS for DIAGRAM
- 17:27, 24 September 2012 diff hist -8 Test EPACTS for DIAGRAM →Download EPACTS
- 17:20, 24 September 2012 diff hist +4 Test EPACTS for DIAGRAM →Example
- 17:17, 24 September 2012 diff hist +9 Test EPACTS for DIAGRAM →Download EPACTS
- 17:17, 24 September 2012 diff hist +36 Test EPACTS for DIAGRAM
- 17:16, 24 September 2012 diff hist +13 Test EPACTS for DIAGRAM
- 17:15, 24 September 2012 diff hist -415 Test EPACTS for DIAGRAM
- 17:11, 24 September 2012 diff hist +1,753 N Test EPACTS for DIAGRAM Created page with '== 1. Download and install EPACTS == EPACTS is available for download [http://www.sph.umich.edu/csg/kang/epacts/download/index.html here]. If you want to use EPACTS in a…'
- 10:10, 24 September 2012 diff hist 0 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 06:22, 22 September 2012 diff hist 0 Minimac →Download
- 05:19, 11 September 2012 diff hist -32 IMPUTE2: 1000 Genomes Imputation Cookbook →Imputation current
- 15:33, 29 August 2012 diff hist +142 VcfRefGen
- 15:32, 29 August 2012 diff hist +19 VcfRefGen →Download
- 15:29, 29 August 2012 diff hist -62 VcfRefGen →Example
- 15:29, 29 August 2012 diff hist +82 VcfRefGen →Example
- 15:29, 29 August 2012 diff hist -82 VcfRefGen →Example
- 15:27, 29 August 2012 diff hist +538 VcfRefGen
- 15:17, 29 August 2012 diff hist +47 VcfRefGen
- 15:16, 29 August 2012 diff hist -9 VcfRefGen
- 15:10, 29 August 2012 diff hist -1 Minimac →Questions and Comments
- 15:10, 29 August 2012 diff hist +142 Minimac
- 15:09, 29 August 2012 diff hist +42 VcfRefGen
- 15:08, 29 August 2012 diff hist +1,254 N VcfRefGen Created page with '''vcfRefGen''' is a tool for generating VCF reference panels for minimac imputation. It reduces VCF files by removing the info field, saving only the GT genotype field and removi…'
- 16:22, 28 August 2012 diff hist -11 ChunkChromosome →Download
- 21:44, 27 August 2012 diff hist -5 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 19:45, 27 August 2012 diff hist +66 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 19:43, 27 August 2012 diff hist +417 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 19:36, 27 August 2012 diff hist -4 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 19:36, 27 August 2012 diff hist +23 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 19:36, 27 August 2012 diff hist +116 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 19:32, 27 August 2012 diff hist -231 Minimac: 1000 Genomes Imputation Cookbook
- 19:31, 27 August 2012 diff hist +298 Minimac: 1000 Genomes Imputation Cookbook
- 19:31, 27 August 2012 diff hist +20 Minimac →Reference
- 19:29, 27 August 2012 diff hist +7 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 19:29, 27 August 2012 diff hist +59 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 19:24, 27 August 2012 diff hist +46 Minimac: 1000 Genomes Imputation Cookbook →Pre-phasing - MaCH
- 19:17, 27 August 2012 diff hist +60 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 19:14, 27 August 2012 diff hist -2 Minimac →Running Minimac
- 19:14, 27 August 2012 diff hist -2 Minimac →using a VCF reference panel
- 19:13, 27 August 2012 diff hist -1 Minimac →Running Minimac
- 19:13, 27 August 2012 diff hist +7 Minimac →Running Minimac
- 19:11, 27 August 2012 diff hist -1 Minimac →Download
- 19:10, 27 August 2012 diff hist -199 IMPUTE2: 1000 Genomes Imputation Cookbook →X-Chromosome Imputation
- 18:55, 27 August 2012 diff hist -2 Minimac: 1000 Genomes Imputation Cookbook →GWAS result QC and SNP harmonization
- 18:54, 27 August 2012 diff hist -4 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:49, 27 August 2012 diff hist +14 Minimac: 1000 Genomes Imputation Cookbook →Reference Haplotypes
- 18:47, 27 August 2012 diff hist +2 Minimac: 1000 Genomes Imputation Cookbook →Reference Haplotypes
- 18:47, 27 August 2012 diff hist +487 Minimac: 1000 Genomes Imputation Cookbook →Reference Haplotypes
- 18:38, 27 August 2012 diff hist +2 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:36, 27 August 2012 diff hist +61 IMPUTE2: 1000 Genomes Imputation Cookbook →Imputation
- 13:48, 17 August 2012 diff hist +233 Minimac: 1000 Genomes Imputation Cookbook
- 16:31, 15 August 2012 diff hist +1 Minimac →Change log
- 16:31, 15 August 2012 diff hist +5 Minimac →Change log
- 16:31, 15 August 2012 diff hist -5 Minimac →Change log
- 16:30, 15 August 2012 diff hist -16 Minimac →Change log
- 16:30, 15 August 2012 diff hist -89 Minimac →Download
- 18:13, 6 August 2012 diff hist +64 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:12, 6 August 2012 diff hist +217 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:11, 6 August 2012 diff hist +311 Minimac: 1000 Genomes Imputation Cookbook →3. Impute pseudo-autosomal part by sex
- 18:11, 6 August 2012 diff hist +317 Minimac: 1000 Genomes Imputation Cookbook →2. Impute non-pseudo-autosomal part by sex
- 18:09, 6 August 2012 diff hist -1 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:08, 6 August 2012 diff hist -88 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:08, 6 August 2012 diff hist +70 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:05, 6 August 2012 diff hist -183 Minimac: 1000 Genomes Imputation Cookbook →1. Split by sex
- 18:05, 6 August 2012 diff hist +37 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 18:04, 6 August 2012 diff hist +66 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 12:47, 6 August 2012 diff hist 0 Minimac →Download
- 12:46, 6 August 2012 diff hist +17 Minimac →Change log
- 12:46, 6 August 2012 diff hist +40 Minimac →Change log
- 12:45, 6 August 2012 diff hist +8 Minimac →Download
- 12:42, 6 August 2012 diff hist +140 Minimac →Download
- 23:12, 24 July 2012 diff hist -6 IMPUTE2: 1000 Genomes Imputation Cookbook →Content
- 23:11, 24 July 2012 diff hist 0 Minimac: 1000 Genomes Imputation Cookbook
- 23:11, 24 July 2012 diff hist -6 Minimac: 1000 Genomes Imputation Cookbook
- 23:06, 24 July 2012 diff hist -4 Minimac: GIANT 1000 Genomes Imputation Cookbook Redirected page to Minimac: 1000 Genomes Imputation Cookbook current
- 23:06, 24 July 2012 diff hist +4 Minimac: GIANT 1000 Genomes Imputation Cookbook
- 23:05, 24 July 2012 diff hist -16,509 Minimac: GIANT 1000 Genomes Imputation Cookbook Redirected page to Minimac: 1000 Genomes Imputation Cookbook
- 23:05, 24 July 2012 diff hist +16,407 Minimac: 1000 Genomes Imputation Cookbook
- 23:04, 24 July 2012 diff hist -33 Impute2: GIANT 1000 Genomes Imputation Cookbook Redirected page to IMPUTE2: 1000 Genomes Imputation Cookbook current