User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 03:26, 26 November 2009 diff hist +224 Parameters.h current
- 03:22, 26 November 2009 diff hist +854 N Parameters.h Created page with '''Parameters.h'' is a header file that defines a series of classes that are useful for processing command line parameters. == Example Usage == <source lang="cpp"> #include "…'
- 11:30, 24 November 2009 diff hist -40 BamGenotypeCheck
- 11:29, 24 November 2009 diff hist +30 N Lanecheck moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive current
- 11:29, 24 November 2009 diff hist 0 m BamGenotypeCheck moved Lanecheck to BamIdentityCheck: renamed lane check to bamIdentityCheck which is more descriptive
- 11:28, 24 November 2009 diff hist -23 TrioCaller Blanked the page
- 14:21, 20 November 2009 diff hist -9 Karma-colorspace →Additional Information
- 14:20, 20 November 2009 diff hist -30 Karma-colorspace
- 14:19, 20 November 2009 diff hist -31 Karma-colorspace →Build Binary Reference Genome and Word Index
- 22:37, 19 November 2009 diff hist +47 Karma
- 17:28, 19 November 2009 diff hist -22 VcfCodingSnps
- 17:27, 19 November 2009 diff hist +90 Main Page →Sequence Analysis Tools
- 17:17, 19 November 2009 diff hist 0 m VcfCodingSnps moved AnnoVcf to VcfCodingSnps: Better name
- 10:06, 18 November 2009 diff hist +64 FastQValidator →Valid FastQ File Requirements
- 10:05, 18 November 2009 diff hist +98 FastQValidator →Valid FastQ File Requirements
- 23:30, 16 November 2009 diff hist +573 N FastQValidator Created page with '== Status == The FastQ Validator is on our Todo List. == Valid FastQ File Requirements == A valid fastQ file should meet the following requirements: * A base sequence sho…'
- 10:43, 16 November 2009 diff hist -1 Karma-colorspace →Input file requirement
- 10:43, 16 November 2009 diff hist -38 Karma-colorspace →Input file requirement
- 10:40, 16 November 2009 diff hist +6 Main Page →Welcome!
- 10:38, 16 November 2009 diff hist +233 Main Page →Welcome!
- 02:10, 15 November 2009 diff hist +1 Main Page →Variant Calling
- 01:52, 15 November 2009 diff hist +190 Abecasis Lab
- 01:49, 15 November 2009 diff hist +1 Abecasis Lab →Former Doctoral Students
- 01:49, 15 November 2009 diff hist +81 Abecasis Lab
- 01:48, 15 November 2009 diff hist +10 Abecasis Lab →Current Members
- 01:47, 15 November 2009 diff hist +831 N Abecasis Lab Created page with '== Current Members == === Research Faculty === Hyun Min Kang === Research Fellows === Bingshan Li === Graduate Students === Wei Chen Jun Ding Youna Hu Elizabeth Jewell Yanm…'
- 01:36, 15 November 2009 diff hist +223 N Genome Analysis Wiki:About Created page with 'This wiki documents useful tools and protocols for genome analysis. It is maintained by the Abecasis Lab at the [http://www.umich.edu University of Michigan] [http://csg.sp…' current
- 01:32, 15 November 2009 diff hist +116 GlfTrio →TODO
- 01:31, 15 November 2009 diff hist +171 GlfSingle
- 01:30, 15 November 2009 diff hist +2,153 N GlfMultiples Created page with ''''glfMultiples''' is a GLF-based variant caller for next-generation sequencing data. It takes a set of GLF format genotype likelihood files as input and generates a [[VC…'
- 00:53, 15 November 2009 diff hist +103 GLF
- 00:51, 15 November 2009 diff hist +10 GlfTrio →Filtering According to Depth and Map Quality
- 00:51, 15 November 2009 diff hist +39 GlfTrio →Basic Usage Example
- 00:48, 15 November 2009 diff hist +152 GlfTrio →Basic Usage Example
- 00:45, 15 November 2009 diff hist 0 GlfTrio →Filtering According to Depth and Map Quality
- 00:45, 15 November 2009 diff hist 0 GlfTrio →Basic Output Options
- 00:44, 15 November 2009 diff hist 0 GlfTrio →X Chromosome Variant Calling
- 00:43, 15 November 2009 diff hist 0 GlfTrio →Sample Labels
- 00:43, 15 November 2009 diff hist -8 GlfTrio →Filtering According to Depth and Map Quality
- 00:43, 15 November 2009 diff hist -8 GlfTrio →Basic Output Options
- 00:42, 15 November 2009 diff hist +2,881 N GlfTrio Created page with ''''glfTrio''' is a GLF-based variant caller for next-generation sequencing data. It takes three GLF format genotype likelihood files as input and generates a VCF-form…'
- 00:04, 15 November 2009 diff hist -2 Main Page →Welcome!
- 19:02, 14 November 2009 diff hist +177 N VCF Created page with ''''VCF''' is the Variant Calling Format. For the current specification, see [http://www.1000genomes.org/wiki/doku.php?id=1000_genomes:analysis:vcfv3.2 VCF format specification].'
- 19:00, 14 November 2009 diff hist +2 Main Page
- 18:59, 14 November 2009 diff hist +278 Main Page
- 18:55, 14 November 2009 diff hist +14 GLF →Last Record
- 18:54, 14 November 2009 diff hist +3,714 GLF
- 18:13, 14 November 2009 diff hist +962 GlfSingle
- 18:07, 14 November 2009 diff hist +556 N GLF Created page with ''''GLF''' is a format for storing marginal likelihoods for next-generation sequence data, conditional on a set of possible genotypes. === Generating GLF Files === GLF files can…'
- 17:59, 14 November 2009 diff hist +448 N GlfSingle Created page with ''''glfSingle''' is a GLF-based variant caller for next-generation sequencing data. It takes a GLF format genotype likelihood file as input and generates a VCF-format …'