User contributions
7 January 2010
Biostatistics 666: Main Page
Class Notes
+27
Biostatistics 666: Introductory Lecture
Slides
+1
Biostatistics 666: Introductory Lecture
Slides
+42
File:666.01.pdf
Biostatistics 666 Introductory Lecture as of 2010/01/06.
Biostatistics 666: Main Page
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+899
6 January 2010
Biostatistics 666: Hardy-Weinberg Equilibrium
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+41
Biostatistics 666: Introductory Lecture
Created page with '== Objective == This lecture introduces course objectives, which are to provide students with a working understanding of the techniques commonly used by statistical geneticists.…'
Biostatistics 666: Hardy-Weinberg Equilibrium
Created page with '== Background Reading == Please read the following paper: Wigginton JE, Cutler DJ and Abecasis GR (2005). A note on exact tests of Hardy-Weinberg equilibrium. ''Am J Hum Genet'…'
Biostatistics 666: Main Page
Class Notes
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666
Redirected page to Biostatistics 666: Main Page
Biostatistics 666: Main Page
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Biostatistics 666: Main Page
Class Notes
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Biostatistics 666: Main Page
Created page with '== Objective == Gene mapping studies aim to study the relationship between genetic variation and susceptibility to human disease. These studies can be used to elucidate the bioc…'
Class Notes
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Class Notes
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Class Notes
BIOSTAT 666 Statistical and Numerical Methods in Human Genetics
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Class Notes
Created page with '== BIOSTAT 666 Statistical and Numerical Methods in Human Genetics == Gene mapping studies aim to study the relationship between genetic variation and suscepti…'
Main Page
Learn Genetics
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Main Page
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+743
19 December 2009
SAM
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+34
BAM
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+76
SAM
Created page with 'The '''SAM Format''' is a text format for storing aligned reads. The current definition of the format is at http://samtools.sourceforge.net/SAM1.pdf BAM/SAM Specification. …'
Mapping Quality Scores
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+670
18 December 2009
17 December 2009
CHARGE
Reference
-5
CHARGE
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+88
Main Page
Read Mapping
+44
Mapping Quality Scores
no edit summary
+172
Mapping Quality Scores
Created page with ''''Mapping Quality Scores''' quantify the probability that a read is misplaced. They were introduced by Heng Li and Richard Durbin in their paper describing MAQ and are usually r…'
15 December 2009
CHARGE
Created page with ''''CHARGE''' is a consortium of several population based cohorts. The acronym stands for Cohorts for Health and Aging Related Genetic Epidemiology. == Participating Cohorts == …'
GWAS
Created page with ''''GWAS''' are genomewide association studies.'
14 December 2009
Main Page
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-2
BAM
Created page with 'The '''BAM Format''' is a binary format for storing aligned reads. The current definition of the format is at http://samtools.sourceforge.net/SAM1.pdf BAM/SAM Specification…'
Talk:Examples of Read Mapping with Karma and BWA
Created page with 'We need a much more informative title for this page. Also, it needs to linked (in some sensible way) to other pages.'
Examples of Read Mapping with Karma and BWA
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Examples of Read Mapping with Karma and BWA
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Examples of Read Mapping with Karma and BWA
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Examples of Read Mapping with Karma and BWA
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SardiNIA
Key References
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SardiNIA
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SardiNIA
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Main Page
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+76
SardiNIA
Medical Sequencing Project
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SardiNIA
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+65
SardiNIA
Created page with '== Key References == If you are looking to learn about the project, I strongly recommend that you read the following papers Pilia G, Chen WM, Scuteri A, Orru M, Albai G, Dei …'
8 December 2009
Mantra.cpp
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+770
Mantra.cpp
New page: '''Mantra.cpp''' provides useful functions handling inheritance vectors. A call to Mantra::Prepare() will first list all the meioses in a pedigree (which constitute an inheritance vect...
26 November 2009
Utility Library
Created page with ' Parameters.h StringHash.h StringMap.h'
StringMap.h
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+12
StringMap.h
Created page with ''''StringMap.h''' declares classes that allow one to store a list of strings and associated items. The list is stored in sorted fashion. Inserts and deletes can be quite expensiv…'
