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Jump to navigationJump to search- 11:05, 25 May 2010 diff hist +74 New Fugue →Linkage Disequilibrium File Options
- 11:04, 25 May 2010 diff hist -12 New Fugue →Command Line Options
- 11:04, 25 May 2010 diff hist +1,383 New Fugue
- 10:54, 25 May 2010 diff hist -26 New Fugue →Download
- 16:17, 24 May 2010 diff hist -56 MaCH →How do I get imputation quality estimates?
- 16:16, 24 May 2010 diff hist -3 MaCH →Does --mle overwrite input genotypes?
- 16:16, 24 May 2010 diff hist +28 MaCH →Does --mle overwrite fed-in genotypes?
- 16:14, 24 May 2010 diff hist -3 MaCH →Why and how to perform a 2-step imputation?
- 16:14, 24 May 2010 diff hist -3 MaCH →How is AL1 defined? Which allele dosage is .dose/.mldose counting?
- 16:13, 24 May 2010 diff hist -3 MaCH →How do I get reference files for an region of interest?
- 16:13, 24 May 2010 diff hist -2 MaCH →How do I get reference files for an region of interest?
- 16:12, 24 May 2010 diff hist -6 MaCH →How do I get reference files for an region of interest?
- 16:12, 24 May 2010 diff hist -110 MaCH →How do I get reference files for an region of interest?
- 16:10, 24 May 2010 diff hist -7 MaCH →Shall I apply QC before or after imputation? If so, how?
- 16:10, 24 May 2010 diff hist -9 MaCH →Shall I apply QC before or after imputation? If so, how?
- 16:10, 24 May 2010 diff hist +40 MaCH →Do I have to sort the pedigree file by physical positions?
- 16:09, 24 May 2010 diff hist 0 MaCH →What if I specified --states R where R exceeds the maximum possible (2*number diploid individuals - 2 + number_haplotypes)?
- 16:08, 24 May 2010 diff hist -536 MaCH →Can I used unphased reference?
- 16:01, 24 May 2010 diff hist +531 MaCH →How is AL1 defined? Which allele dosage is .dose/.mldose counting?
- 15:53, 24 May 2010 diff hist -20 MaCH →How is AL1 defined? Which allele dosage is .dose/.mldose counting?
- 07:15, 22 May 2010 diff hist 0 GlfMultiples →Download
- 13:07, 21 May 2010 diff hist +7 Generic Exome Analysis Plan →Read Mapping current
- 02:52, 21 May 2010 diff hist 0 GlfMultiples →Download
- 05:42, 20 May 2010 diff hist -1 GlfMultiples →VCF Output
- 05:42, 20 May 2010 diff hist -8 GlfMultiples →VCF Output
- 05:42, 20 May 2010 diff hist +413 GlfMultiples →Filtering According to Depth and Map Quality
- 05:38, 20 May 2010 diff hist +9 GlfMultiples →X Chromosome Variant Calling
- 05:38, 20 May 2010 diff hist +130 GlfMultiples →Model for Variant Calling
- 00:16, 20 May 2010 diff hist +22 Merlin current
- 00:16, 20 May 2010 diff hist 0 RelativeFinder →Alternative Relationships
- 00:15, 20 May 2010 diff hist +24 RelativeFinder →Alternative Relationships
- 00:14, 20 May 2010 diff hist +8 RelativeFinder →Alternative Relationships
- 00:14, 20 May 2010 diff hist +4,960 N RelativeFinder Created page with 'Category:Software '''relativeFinder''' is a program for checking relationships between pairs of individuals. There are many excellent programs that carry out similar tasks. S…'
- 22:11, 18 May 2010 diff hist +24 N ExomePicks Program moved ExomePicks Program to ExomePicks: Make naming consistent with that of other software utilities current
- 22:11, 18 May 2010 diff hist 0 m ExomePicks moved ExomePicks Program to ExomePicks: Make naming consistent with that of other software utilities
- 22:10, 18 May 2010 diff hist -1 MaCH
- 22:09, 18 May 2010 diff hist +14 MaCH
- 09:01, 17 May 2010 diff hist +273 METAL Documentation →Selecting an Analysis Scheme
- 08:57, 17 May 2010 diff hist +23 N LocusZoom Documentation moved LocusZoom Documentation to LocusZoom over redirect current
- 08:57, 17 May 2010 diff hist 0 m LocusZoom moved LocusZoom Documentation to LocusZoom over redirect
- 08:56, 17 May 2010 diff hist +19 N METAL Program moved METAL Program to METAL current
- 08:56, 17 May 2010 diff hist 0 m METAL moved METAL Program to METAL
- 13:54, 11 May 2010 diff hist +24 New Fugue
- 09:16, 11 May 2010 diff hist +702 N New Fugue Created page with '''New Fugue'' is a program for estimation of haplotype frequencies and linkage disequilibrium coefficients in family data. The current implementation uses the methods described b…'
- 01:48, 8 May 2010 diff hist +62 Abecasis Lab →Research Fellows
- 01:47, 8 May 2010 diff hist +24 Abecasis Lab →Staff
- 01:46, 8 May 2010 diff hist +1 Abecasis Lab →Research Fellows
- 01:46, 8 May 2010 diff hist +22 Abecasis Lab →Research Fellows
- 19:26, 7 May 2010 diff hist +2,205 TinySimulator →Command Line Options current
- 19:15, 7 May 2010 diff hist +22 TinySimulator
- 19:15, 7 May 2010 diff hist +22 GlfTrio
- 19:14, 7 May 2010 diff hist +5 GlfMultiples →Basic Usage Example
- 19:14, 7 May 2010 diff hist +22 GlfMultiples
- 19:13, 7 May 2010 diff hist +22 ExomePicks
- 19:13, 7 May 2010 diff hist +59 ExomePicks
- 14:29, 5 May 2010 diff hist +190 Generic Exome Analysis Plan →Variant Filters
- 11:14, 2 May 2010 diff hist +730 N TinySimulator Created page with 'The '''tinySimulator''' is a small and (somewhat) memory efficient forward simulator. It simulates DNA sequences over time, allowing for the possibility of mutation, recombinatio…'
- 10:25, 29 April 2010 diff hist -10 Verifying Sample Identities - Implementation →Mathematical Details current
- 13:22, 23 April 2010 diff hist +211 SardiNIA →Key References
- 13:22, 23 April 2010 diff hist +1,006 SardiNIA →Project Leaders
- 11:51, 21 April 2010 diff hist -1 Generic Exome Analysis Plan →Read Mapping
- 11:50, 21 April 2010 diff hist +27 Generic Exome Analysis Plan →Read Mapping
- 08:02, 21 April 2010 diff hist +3 Generic Exome Analysis Plan →Variant Filters
- 07:14, 21 April 2010 diff hist +415 Generic Exome Analysis Plan →Read Mapping
- 00:30, 21 April 2010 diff hist +228 Generic Exome Analysis Plan →Read Mapping
- 00:28, 21 April 2010 diff hist +112 Generic Exome Analysis Plan
- 00:28, 21 April 2010 diff hist +199 Generic Exome Analysis Plan →Generate Variant Calls
- 00:27, 21 April 2010 diff hist +1,272 Generic Exome Analysis Plan →Special Considerations for Admixed Samples
- 00:13, 21 April 2010 diff hist 0 Kyoto Encyclopedia of Genes and Genomes →Website current
- 00:13, 21 April 2010 diff hist +13 Kyoto Encyclopedia of Genes and Genomes →Website
- 00:12, 21 April 2010 diff hist +294 Nm Kyoto Encyclopedia of Genes and Genomes Created page with 'The Kyoto Encyclopedia of Genes and Genomes ('''KEGG''') is a popular, curated resource summarizing information about gene function in a manner that allows genes with similar fun…'
- 00:09, 21 April 2010 diff hist -1 Generic Exome Analysis Plan →Visualize Results =
- 00:08, 21 April 2010 diff hist -1 Generic Exome Analysis Plan →More Q-Q Plots =
- 00:08, 21 April 2010 diff hist +2,638 Generic Exome Analysis Plan
- 23:55, 20 April 2010 diff hist +687 Generic Exome Analysis Plan →Special Considerations for Admixed Samples
- 23:51, 20 April 2010 diff hist +123 Generic Exome Analysis Plan →Generate Variant Calls
- 23:49, 20 April 2010 diff hist -2 Generic Exome Analysis Plan →Prior to Mapping
- 23:48, 20 April 2010 diff hist -2 Generic Exome Analysis Plan →Read Mapping and Variant Calling
- 23:48, 20 April 2010 diff hist +3,032 Generic Exome Analysis Plan →Read Mapping
- 23:34, 20 April 2010 diff hist +1,899 N Generic Exome Analysis Plan Created page with 'This page outlines a generic plan for analysis of a whole exome sequencing project. The idea is that the points listed here might serve as a starting point for discussion of the …'
- 15:22, 20 April 2010 diff hist -7 Verifying Sample Identities - Implementation →Mathematical Details
- 10:06, 20 April 2010 diff hist 0 File:666.21.pdf uploaded a new version of "File:666.21.pdf" current
- 08:39, 20 April 2010 diff hist +75 Biostatistics 666: Main Page →Class Notes
- 08:38, 20 April 2010 diff hist 0 N File:666.21.pdf
- 13:44, 15 April 2010 diff hist +726 ExomePicks →Acknowledgements
- 10:13, 15 April 2010 diff hist 0 Abecasis Lab →Former Doctoral Students
- 10:12, 15 April 2010 diff hist +42 N Goncalo Abecasis Created page with '300px|center'
- 10:12, 15 April 2010 diff hist -44 Main Page →Abecasis Group Meeting
- 10:11, 15 April 2010 diff hist -1 FastQValidator →Required Parameters
- 10:10, 15 April 2010 diff hist -2 FastQValidator →Examples
- 09:42, 15 April 2010 diff hist -165 LocusZoom →Commonly Used LocusZoom Options
- 09:38, 15 April 2010 diff hist +1 LocusZoom →Commonly Used LocusZoom Options
- 09:38, 15 April 2010 diff hist +3,798 LocusZoom →Generate single plots using our publicly-available lipids GWAS data
- 09:25, 15 April 2010 diff hist -5,026 LocusZoom →Generate single plots using our publicly-available lipids GWAS data
- 09:23, 15 April 2010 diff hist +1,051 LocusZoom →Uploading Your Association Study Results
- 09:16, 15 April 2010 diff hist +309 LocusZoom →Uploading Your Association Study Results
- 09:13, 15 April 2010 diff hist -8 LocusZoom →Generating a Hit Spec File
- 09:12, 15 April 2010 diff hist +36 LocusZoom →Generating a Hit Spec File
- 09:12, 15 April 2010 diff hist +10 LocusZoom →Generating a Hit Spec File
- 09:12, 15 April 2010 diff hist -10 LocusZoom →Generating a Hit Spec File