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Jump to navigationJump to search- 09:37, 26 November 2012 diff hist +13 N File:666.2012.01.pdf Version zero!
- 09:37, 26 November 2012 diff hist +89 Biostatistics 666: Main Page →Class Notes
- 02:08, 21 November 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes
- 02:07, 21 November 2012 diff hist 0 File:666.2011.02.pdf uploaded a new version of "File:666.2011.02.pdf": →Minor update; added empirical distribution of read pair distances from QPLOT current
- 02:06, 21 November 2012 diff hist 0 File:666.2010.05.pdf uploaded a new version of "File:666.2010.05.pdf": →Minor typo fixes current
- 21:09, 16 November 2012 diff hist -14 RAREMETALWORKER Minor typos fixed
- 00:32, 14 November 2012 diff hist 0 File:666.2010.04.pdf uploaded a new version of "File:666.2010.04.pdf": Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing. current
- 06:33, 12 November 2012 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf": Adds a summary slide. current
- 06:26, 12 November 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes
- 03:33, 31 October 2012 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf" current
- 03:33, 31 October 2012 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Minor typo fix. current
- 03:07, 29 October 2012 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Fixed look of slides with equations.
- 02:08, 29 October 2012 diff hist -3 Biostatistics 666: Linkage Analysis in Sibling Pairs →Recommended Reading
- 05:24, 22 October 2012 diff hist 0 File:666.2010.02.pdf uploaded a new version of "File:666.2010.02.pdf": Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long. current
- 06:16, 3 October 2012 diff hist 0 File:666.12.pdf uploaded a new version of "File:666.12.pdf": Minor edits. current
- 02:25, 26 September 2012 diff hist 0 File:666.10.pdf uploaded a new version of "File:666.10.pdf": Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters. current
- 23:05, 18 September 2012 diff hist 0 File:666.06.pdf uploaded a new version of "File:666.06.pdf" current
- 08:40, 10 September 2012 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": Minor updates. current
- 02:15, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf": Yet more minor edits, this time listing potential group projects. current
- 02:07, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf": Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme
- 02:02, 5 September 2012 diff hist 0 File:2011.666.01.pdf uploaded a new version of "File:2011.666.01.pdf"
- 01:17, 5 September 2012 diff hist +46 Biostatistics 666: Main Page →Course History
- 01:16, 5 September 2012 diff hist +103 Biostatistics 666: Main Page →Course History
- 01:12, 5 September 2012 diff hist +116 Biostatistics 666: Main Page →Standards of Academic Conduct
- 01:11, 5 September 2012 diff hist +12 Biostatistics 666: Main Page →Course History
- 01:11, 5 September 2012 diff hist -16 Biostatistics 666: Main Page →Office Hours
- 01:10, 5 September 2012 diff hist -169 Biostatistics 666: Main Page →Scheduling
- 01:08, 5 September 2012 diff hist +19 Biostatistics 666: Main Page →Objective
- 01:07, 5 September 2012 diff hist -167 Biostatistics 666: Main Page →Problem Set Solutions
- 10:46, 8 June 2012 diff hist -18 Minimac →Running Minimac
- 15:55, 1 June 2012 diff hist +230 Nm User talk:Michael Welcome! current
- 15:55, 1 June 2012 diff hist +318 Nm User:Michael Creating user page with biography of new user. current
- 15:53, 1 June 2012 diff hist +333 Karma
- 10:34, 13 April 2012 diff hist +16 Abecasis Group Awards →Goncalo's Awards
- 10:33, 13 April 2012 diff hist +131 Abecasis Group Awards →Goncalo's Awards
- 15:02, 5 April 2012 diff hist +80 Short Workshops
- 05:27, 8 February 2012 diff hist +1 TrioCaller →Converting Alignments to BAM format
- 05:24, 8 February 2012 diff hist +6 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
- 05:23, 8 February 2012 diff hist -92 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
- 05:22, 8 February 2012 diff hist +102 TrioCaller →Genotype Refinement Using Linkage Disequilibrium Information (TrioCaller)
- 05:20, 8 February 2012 diff hist +135 TrioCaller →Alternative way to call variants
- 05:18, 8 February 2012 diff hist -8 TrioCaller →Initial set of variant calls
- 05:16, 8 February 2012 diff hist -405 TrioCaller →Mapping Reads to The Genome
- 05:11, 8 February 2012 diff hist +91 TrioCaller →Building an Index for Short Read Alignment
- 05:09, 8 February 2012 diff hist -61 TrioCaller →Required Software
- 05:02, 8 February 2012 diff hist +9 TrioCaller →Download with example datasets
- 07:42, 23 January 2012 diff hist +380 N ThunderVCF Created page with 'This a modified version of MACH, designed for the accurate genotyping of low pass sequence data from unrelated individuals and included in the UMAKE download. The tool requi…' current
- 07:37, 23 January 2012 diff hist +287 Tutorial: Low Pass Sequence Analysis →Example Dataset
- 07:32, 23 January 2012 diff hist 0 Tutorial: Low Pass Sequence Analysis →Example Dataset
- 17:56, 20 January 2012 diff hist +523 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
- 05:42, 20 January 2012 diff hist +236 Tutorial: Low Pass Sequence Analysis →Example Dataset
- 04:49, 7 December 2011 diff hist +92 N File:666.24.pdf Introduction to likelihood calculations in large pedigrees and the Elston Stewart algorithm.
- 04:48, 7 December 2011 diff hist +257 N Biostatistics 666: Likelihood Calculations for Large Pedigrees Created page with '== Outline == This lecture introduces an alternative formulation of the pedigree likelihood, that does not rely on summation over IBD states. The lecture also introduces the Els…' current
- 04:47, 7 December 2011 diff hist +95 Biostatistics 666: Main Page →Class Notes
- 04:20, 7 December 2011 diff hist 0 File:666.2011.01.pdf uploaded a new version of "File:666.2011.01.pdf": Corrected small typos.
- 04:19, 7 December 2011 diff hist 0 File:666.2011.02.pdf uploaded a new version of "File:666.2011.02.pdf": Corrected small typos.
- 09:14, 5 December 2011 diff hist +5 Biostatistics 666: Analysis of Copy Number Using Sequence Data →Recommended Reading current
- 09:13, 5 December 2011 diff hist +50 N File:666.2011.02.pdf Copy Number Variation Analysis Using Sequence Data
- 09:13, 5 December 2011 diff hist +524 N Biostatistics 666: Analysis of Copy Number Using Sequence Data Created page with '== Overview == Introduces the analysis of copy number variation using next generation sequence data, discussing the types of evidence that can be observed in one individual and …'
- 09:11, 5 December 2011 diff hist +100 Biostatistics 666: Main Page →Class Notes
- 07:48, 30 November 2011 diff hist +2 Biostatistics 666: Rare Variant Burden Tests →Recommended Reading current
- 07:48, 30 November 2011 diff hist +551 N Biostatistics 666: Rare Variant Burden Tests Created page with '== Objective == Discussion of the challenges involved in the analysis of rare variation. Introduces basic burden tests, discusses the benefits of different variant weighting sch…'
- 07:44, 30 November 2011 diff hist +82 Biostatistics 666: Main Page →Class Notes
- 07:43, 30 November 2011 diff hist +61 N File:666.2011.01.pdf Introduction to Rare Variant Burden Tests and Related Issues.
- 05:59, 28 November 2011 diff hist 0 File:666.2010.05.pdf uploaded a new version of "File:666.2010.05.pdf": Added Sardinia example and discussion of consensus genotype calling.
- 04:25, 28 November 2011 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf": Fixes several small typos in worked imputation examples.
- 07:49, 23 November 2011 diff hist 0 File:666.2010.04.pdf uploaded a new version of "File:666.2010.04.pdf": Updates to introduce base quality, mapping quality and base alignment quality.
- 06:55, 21 November 2011 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf": Minor updates to figures.
- 06:54, 21 November 2011 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Minor updates to figures.
- 06:54, 21 November 2011 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf": Minor cosmetic updates.
- 07:17, 16 November 2011 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf": This version removes page numbers (a visual nuisance) and adds a mention of approaches that use empirical, rather than pedigree based, kinship coefficients.
- 07:15, 16 November 2011 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf"
- 08:01, 9 November 2011 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Fixed typos, added example of age-related macular degeneration linkage study.
- 17:53, 7 November 2011 diff hist +76 Exome Chip Design →Grunt Work
- 05:12, 7 November 2011 diff hist 0 File:666.2010.02.pdf uploaded a new version of "File:666.2010.02.pdf": Simplified lecture to make it fit more easily into one hour.
- 17:43, 3 November 2011 diff hist +31 MediaWiki:Common.css current
- 17:38, 3 November 2011 diff hist +185 Code Sample: Generating QQ Plots in R →Sample Usage
- 17:34, 3 November 2011 diff hist +66 Code Sample: Generating QQ Plots in R →R Lattice Graphics
- 17:30, 3 November 2011 diff hist +31,589 N MediaWiki:Common.css Created page with '→CSS placed here will be applied to all skins: →Copied verbatim from en.wikipedia.org/wiki/MediaWiki:Common.css: #interwiki-completelist { font-weight: bold; } bod…'
- 07:03, 2 November 2011 diff hist +82 Biostatistics 666: Main Page →Older Lectures
- 07:02, 2 November 2011 diff hist -82 Biostatistics 666: Main Page →Class Notes
- 11:49, 1 November 2011 diff hist +7 Code Sample: Generating QQ Plots in R
- 11:44, 1 November 2011 diff hist +209 N MediaWiki:Geshi.css Created page with '→CSS placed here will be applied to GeSHi syntax highlighting: div.mw-geshi div, pre { padding: 1em; margin: 1em 0; border: 1px dashed #2f6fab; font-family: monospa…' current
- 16:41, 31 October 2011 diff hist +8,486 N Code Sample: Generating QQ Plots in R Created page with 'Quantile-quantile plots (qq-plots) can be useful for verifying that a set of values come from a certain distribution. For example in a genome-wide association study, we expect th…'
- 16:40, 31 October 2011 diff hist +14 N File:Pval-qq-sample.png Sample QQ Plot current
- 11:45, 28 October 2011 diff hist +69 Biostatistics 666: Main Page →Problem Set Solutions
- 11:44, 28 October 2011 diff hist +29 Biostatistics 666: Main Page →Office Hours
- 11:43, 28 October 2011 diff hist +34 Biostatistics 666: Main Page →Office Hours
- 11:42, 28 October 2011 diff hist -76 Biostatistics 666: Main Page →Scheduling
- 10:09, 28 October 2011 diff hist +234 Nm User talk:Clement Ma Welcome! current
- 10:09, 28 October 2011 diff hist +353 Nm User:Clement Ma Creating user page with biography of new user. current
- 02:22, 24 October 2011 diff hist 0 File:666.12.pdf uploaded a new version of "File:666.12.pdf": Added ACE gene example
- 09:54, 18 October 2011 diff hist +325 N Talk:Minimac: 1000 Genomes Imputation Cookbook Created page with 'Issues to resolve: * No --prefix in MACH example command line (both for single job and in parallel) * Should make sure MACH output is gzipped (I think Yun has enabled this by de…' current
- 09:50, 18 October 2011 diff hist 0 IMPUTE2: 1000 Genomes Imputation Cookbook →Imputation
- 09:48, 10 October 2011 diff hist -1 Exome Chip Design →Online Content
- 09:47, 10 October 2011 diff hist +314 Exome Chip Design →Online Content
- 09:46, 10 October 2011 diff hist -2 Exome Chip Design →Online Content
- 09:46, 10 October 2011 diff hist 0 Exome Chip Design →Online Content
- 09:45, 10 October 2011 diff hist +33 Exome Chip Design →Online Content
- 09:45, 10 October 2011 diff hist 0 Exome Chip Design →Online Content
- 09:44, 10 October 2011 diff hist +264 Exome Chip Design →Key Credit
- 09:41, 10 October 2011 diff hist +49 N File:2011.09 - Exome Chip.pdf Summary of exome chip design process and content. current
- 17:46, 4 October 2011 diff hist +44 Abecasis Lab →Former Doctoral Students
- 10:32, 3 October 2011 diff hist 0 Abecasis Lab →Alumni
- 07:00, 3 October 2011 diff hist +28 Abecasis Lab →Former Masters Students
- 07:00, 3 October 2011 diff hist -4 Abecasis Lab →Graduate Students
- 06:58, 3 October 2011 diff hist -14 Abecasis Lab →Research Fellows
- 06:57, 3 October 2011 diff hist +260 Abecasis Lab →Former Research Fellows
- 06:05, 3 October 2011 diff hist 0 File:666.06.pdf uploaded a new version of "File:666.06.pdf": Minor updates to the lecture, including: * Explicit formulae for Tajima's D (very complicated!) * More extended discussion of the impact of population size on the coalescent
- 09:37, 30 September 2011 diff hist +9 Exome Chip Design →Content Contributors
- 22:43, 29 September 2011 diff hist +11 Exome Chip Design →Assay Design Rates
- 22:20, 29 September 2011 diff hist +43 Exome Chip Design →Content Contributors
- 22:16, 29 September 2011 diff hist +28 Exome Chip Design →Content Contributors
- 22:12, 29 September 2011 diff hist +31 Exome Chip Design →Content Contributors
- 22:10, 29 September 2011 diff hist +1,486 Exome Chip Design →Grunt Work
- 19:19, 29 September 2011 diff hist +104 METAL Documentation →Specifying Weights in P-value Based Analysis
- 19:13, 29 September 2011 diff hist +163 Exome Chip Design →Coding Variants
- 19:11, 29 September 2011 diff hist +33 Exome Chip Design →Grunt Work
- 19:11, 29 September 2011 diff hist 0 Exome Chip Design →Assay Design Rates
- 19:10, 29 September 2011 diff hist +7 Exome Chip Design →Assay Design Rates
- 19:09, 29 September 2011 diff hist -13 Exome Chip Design →Assay Design Rates
- 19:09, 29 September 2011 diff hist +90 Exome Chip Design →Assay Design Rates
- 19:08, 29 September 2011 diff hist +387 Exome Chip Design →Assay Design Rates
- 19:04, 29 September 2011 diff hist +5 Exome Chip Design →Assay Design Rates
- 19:04, 29 September 2011 diff hist +485 Exome Chip Design
- 18:58, 29 September 2011 diff hist +1,429 Exome Chip Design →Coding Variants
- 18:46, 29 September 2011 diff hist -60 Exome Chip Design →HLA tag SNPs
- 18:45, 29 September 2011 diff hist +7 Exome Chip Design →Chromosome Y SNPs
- 18:45, 29 September 2011 diff hist -1 Exome Chip Design →Mitochondrial SNPs
- 18:44, 29 September 2011 diff hist +65 Exome Chip Design →Functionally interesting variants
- 18:44, 29 September 2011 diff hist -62 Exome Chip Design →Fingerprint SNPs
- 18:44, 29 September 2011 diff hist +127 Exome Chip Design →Random set of synonymous variants (as comparator)
- 18:43, 29 September 2011 diff hist -54 Exome Chip Design →Scaffold for Identity by Descent
- 18:42, 29 September 2011 diff hist -17 Exome Chip Design →Native American vs European Ancestry
- 18:39, 29 September 2011 diff hist 0 Exome Chip Design →African American vs European Ancestry
- 18:39, 29 September 2011 diff hist -59 Exome Chip Design →African American vs European Ancestry
- 18:38, 29 September 2011 diff hist -574 Exome Chip Design →Tags for Previously Described GWAS Hits
- 12:59, 29 September 2011 diff hist +77 Exome Chip Design →Additional Content
- 12:58, 29 September 2011 diff hist +432 Exome Chip Design →Variants that Alter Protein Function
- 12:52, 29 September 2011 diff hist +116 Exome Chip Design →Splice Variants
- 12:48, 29 September 2011 diff hist +612 Exome Chip Design →HLA tag SNPs
- 12:42, 29 September 2011 diff hist -358 Exome Chip Design →Variants that Alter Protein Function
- 11:55, 29 September 2011 diff hist +523 Exome Chip Design
- 08:39, 28 September 2011 diff hist +89 Biostatistics 666: Main Page →Scheduling
- 08:35, 28 September 2011 diff hist 0 File:666.04.pdf uploaded a new version of "File:666.04.pdf": Minor typo corrections. current
- 08:34, 28 September 2011 diff hist 0 File:666.05.pdf uploaded a new version of "File:666.05.pdf": Added frequency spectrum from 12,000 individuals. current
- 09:54, 27 September 2011 diff hist -32 Exome Chip Design →Coordination
- 11:24, 22 September 2011 diff hist +113 Abecasis Group Awards →American Society of Human Genetics
- 11:15, 22 September 2011 diff hist +110 Abecasis Group Awards →American Society of Human Genetics
- 00:05, 22 September 2011 diff hist +132 Abecasis Group Awards →American Society of Human Genetics
- 23:47, 21 September 2011 diff hist +344 Minimac Command Reference →Output Parameters
- 23:39, 21 September 2011 diff hist 0 Minimac →Download
- 02:31, 21 September 2011 diff hist +23 Polymutt: a tool for calling polymorphism and de novo mutations in families for sequencing data
- 08:12, 19 September 2011 diff hist +10 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 08:11, 19 September 2011 diff hist +215 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 08:10, 19 September 2011 diff hist +37 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
- 08:09, 19 September 2011 diff hist -1 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 08:08, 19 September 2011 diff hist +133 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 07:50, 19 September 2011 diff hist +289 Minimac: 1000 Genomes Imputation Cookbook →Imputation into Phased Haplotypes - minimac
- 07:49, 19 September 2011 diff hist +543 Minimac Command Reference →Reference Haplotype Set
- 07:48, 19 September 2011 diff hist -543 Minimac Command Reference →Target Haplotype Set
- 07:44, 19 September 2011 diff hist +5 Minimac Command Reference →Target Haplotype Set
- 07:44, 19 September 2011 diff hist +6 Minimac Command Reference →Target Haplotype Set
- 07:43, 19 September 2011 diff hist +532 Minimac Command Reference →Target Haplotype Set
- 04:27, 19 September 2011 diff hist -2 Minimac: 1000 Genomes Imputation Cookbook →Questions and Comments
- 04:13, 19 September 2011 diff hist -31 File:666.03.pdf
- 04:12, 19 September 2011 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": →Minor updates to the lecture - added recommended reading list, synchronized content with 2011 lecture series
- 07:33, 12 September 2011 diff hist +348 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Slides current
- 07:32, 12 September 2011 diff hist +48 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Slides
- 07:31, 12 September 2011 diff hist +216 Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium →Objective
- 07:29, 12 September 2011 diff hist +289 N Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium Created page with '== Objective == This lecture does double duty, introducing course objectives and the concept of Hardy Weinberg Equilibrium. It combines topics previously covered in two separat…'
- 07:27, 12 September 2011 diff hist +150 Biostatistics 666: Main Page →Older Lectures
- 07:27, 12 September 2011 diff hist -43 Biostatistics 666: Main Page →Class Notes
- 07:26, 12 September 2011 diff hist +75 N File:2011.666.01.pdf Course Introduction and Hardy Weinberg Lecture Combined into A Single Class
- 05:48, 12 September 2011 diff hist -167 Biostatistics 666: Main Page →Problem Set Solutions
- 05:45, 12 September 2011 diff hist +12 Biostatistics 666: Main Page →Course History
- 05:44, 12 September 2011 diff hist -24 Biostatistics 666: Main Page →Office Hours
- 05:42, 12 September 2011 diff hist -1 Biostatistics 666: Main Page →Scheduling
- 05:42, 12 September 2011 diff hist +65 Biostatistics 666: Main Page →Scheduling
- 05:41, 12 September 2011 diff hist +61 Biostatistics 666: Main Page →Target Audience
- 06:50, 7 September 2011 diff hist -6 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
- 06:42, 7 September 2011 diff hist -4 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
- 06:42, 7 September 2011 diff hist -4 Tutorial: Low Pass Sequence Analysis →Indexing the BAM file
- 06:41, 7 September 2011 diff hist +5 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
- 06:38, 7 September 2011 diff hist -4 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
- 06:36, 7 September 2011 diff hist +27 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
- 06:29, 7 September 2011 diff hist +5 Tutorial: Low Pass Sequence Analysis →Browsing Alignment Results
- 06:28, 7 September 2011 diff hist -1 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
- 05:47, 7 September 2011 diff hist -1 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
- 05:36, 7 September 2011 diff hist +7 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
- 05:35, 7 September 2011 diff hist -5 Tutorial: Low Pass Sequence Analysis →Converting Alignments to BAM format
- 05:35, 7 September 2011 diff hist -4 Tutorial: Low Pass Sequence Analysis →Indexing and Annotating the BAM file
- 05:18, 7 September 2011 diff hist +1,593 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
- 04:55, 7 September 2011 diff hist +1,940 Tutorial: Low Pass Sequence Analysis →Initial set of variant calls
- 04:37, 7 September 2011 diff hist +1 Tutorial: Low Pass Sequence Analysis →Mapping Reads to The Genome
- 04:35, 7 September 2011 diff hist -3 Tutorial: Low Pass Sequence Analysis →Sequence Analysis Workshop
- 04:32, 7 September 2011 diff hist +4,561 N Tutorial: Low Pass Sequence Analysis Created page with '= Sequence Analysis Workshop = In this workshop, we will illustrate some of the essential steps in the analysis of next generation sequence data. As part of the process, you wil…'
- 04:27, 7 September 2011 diff hist +42 Short Workshops
- 06:14, 2 September 2011 diff hist 0 Minimac →Download
- 11:19, 23 August 2011 diff hist +47 Exome Chip Design →Ancestry Informative Markers
- 11:18, 23 August 2011 diff hist +54 Exome Chip Design →Scaffold for Identity by Descent
- 11:16, 23 August 2011 diff hist +50 Exome Chip Design →Random set of synonymous variants (as comparator)
- 11:06, 23 August 2011 diff hist +59 Exome Chip Design →Ancestry Informative Markers
- 10:01, 23 August 2011 diff hist +154 Exome Chip Design →Tags for Previously Described GWAS Hits
- 09:56, 23 August 2011 diff hist -3 Exome Chip Design →Variants that Alter Protein Function
- 09:56, 23 August 2011 diff hist +2 Exome Chip Design →Variants that Alter Protein Function
- 09:55, 23 August 2011 diff hist +217 Exome Chip Design →Ancestry Informative Markers
- 09:46, 23 August 2011 diff hist 0 Exome Chip Design →Fingerprint SNPs
- 09:44, 23 August 2011 diff hist +143 Exome Chip Design →HLA tag SNPs
- 09:42, 23 August 2011 diff hist +57 Exome Chip Design →Fingerprint SNPs
- 22:09, 18 August 2011 diff hist 0 Minimac →Download
- 23:07, 16 August 2011 diff hist +8,205 N Exome Chip Design Created page with 'This page describes characteristics of the Illumina Exome Chip. The plan is that this page will be publicly visible. = Key Credit = We thank all the individuals who generously …'
- 06:47, 12 August 2011 diff hist -1 Minimac →Additional Sources of Information
- 06:46, 12 August 2011 diff hist 0 Minimac →Download
- 16:24, 10 August 2011 diff hist +336 IMPUTE2: 1000 Genomes Imputation Cookbook →Association Analysis
- 16:19, 10 August 2011 diff hist +138 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2
- 16:17, 10 August 2011 diff hist +76 IMPUTE2 current
- 15:13, 5 August 2011 diff hist +1 Minimac →Additional Sources of Information
- 11:15, 5 August 2011 diff hist +504 Minimac →Getting Started
- 11:10, 5 August 2011 diff hist +48 Minimac →Download
- 11:09, 5 August 2011 diff hist -2 Minimac →X Chromosome Imputation
- 10:12, 5 August 2011 diff hist -222 Minimac →NCBI build 36 / NCBI build 37
- 10:12, 5 August 2011 diff hist +748 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
- 10:06, 5 August 2011 diff hist +43 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
- 10:05, 5 August 2011 diff hist +1,596 Minimac: 1000 Genomes Imputation Cookbook →Further Time Savings
- 10:05, 5 August 2011 diff hist -16 ChunkChromosome →Usage
- 09:14, 5 August 2011 diff hist +359 Minimac: 1000 Genomes Imputation Cookbook
- 09:02, 5 August 2011 diff hist +287 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 08:55, 5 August 2011 diff hist +42 ChunkChromosome →Download
- 08:55, 5 August 2011 diff hist +102 ChunkChromosome →Download
- 08:52, 5 August 2011 diff hist +114 Minimac →Download
- 08:40, 5 August 2011 diff hist +150 ChunkChromosome →Download
- 08:06, 5 August 2011 diff hist +5 ChunkChromosome →Usage
- 08:05, 5 August 2011 diff hist +376 ChunkChromosome →Usage
- 07:55, 5 August 2011 diff hist +439 ChunkChromosome →Usage
- 07:43, 5 August 2011 diff hist +393 ChunkChromosome →Usage
- 07:26, 5 August 2011 diff hist +23 ChunkChromosome →Usage
- 07:23, 5 August 2011 diff hist 0 ChunkChromosome →Usage
- 07:22, 5 August 2011 diff hist +1,171 N ChunkChromosome Created page with '''ChunkChromosome'' is a helper utility for minimac and MaCH. It can be used to facilitate analyses of very large datasets in overlapping slices. == Parameters == ''Chu…'
- 07:12, 5 August 2011 diff hist +841 N Hardy Weinberg equilibrium Created page with 'In the absence of migration, mutation, natural selection, and assortative mating, genotype frequencies at any locus are a simple function of allele frequencies. This phenomenon, …' current
- 07:07, 5 August 2011 diff hist +1 Minimac: 1000 Genomes Imputation Cookbook →Shoud I use MaCH or minimac?
- 07:02, 5 August 2011 diff hist +44 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 07:00, 5 August 2011 diff hist +14 Minimac: 1000 Genomes Imputation Cookbook →Imputation quality evaluation
- 06:59, 5 August 2011 diff hist -3 Minimac: 1000 Genomes Imputation Cookbook →X Chromosome Imputation
- 06:57, 5 August 2011 diff hist +269 Minimac: 1000 Genomes Imputation Cookbook →Reference Haplotypes
- 06:54, 5 August 2011 diff hist +591 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 06:49, 5 August 2011 diff hist +69 N IMPUTE2 Created page with 'An imputation package developed by Bryan Howie and Jonathan Marchini.'
- 06:48, 5 August 2011 diff hist +189 IMPUTE2: 1000 Genomes Imputation Cookbook →Content
- 06:47, 5 August 2011 diff hist +127 Minimac: 1000 Genomes Imputation Cookbook
- 06:43, 5 August 2011 diff hist +391 IMPUTE2: 1000 Genomes Imputation Cookbook →Content
- 06:40, 5 August 2011 diff hist +82 IMPUTE2: 1000 Genomes Imputation Cookbook →Imputation
- 06:40, 5 August 2011 diff hist -1 IMPUTE2: 1000 Genomes Imputation Cookbook →Association Analysis =
- 06:39, 5 August 2011 diff hist +50 IMPUTE2: 1000 Genomes Imputation Cookbook →Imputation
- 06:37, 5 August 2011 diff hist +1 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2
- 06:36, 5 August 2011 diff hist -3 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2 =
- 06:35, 5 August 2011 diff hist -1,210 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2 =
- 06:16, 5 August 2011 diff hist +2 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2 =
- 06:15, 5 August 2011 diff hist -4 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2 =
- 06:15, 5 August 2011 diff hist -2 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing using IMPUTE2 =
- 06:14, 5 August 2011 diff hist +8,254 IMPUTE2: 1000 Genomes Imputation Cookbook →Pre-Phasing
- 05:38, 5 August 2011 diff hist +54 IMPUTE2: 1000 Genomes Imputation Cookbook →Content
- 05:38, 5 August 2011 diff hist +499 IMPUTE2: 1000 Genomes Imputation Cookbook →Convert Genotype Data to Build 37
- 05:31, 5 August 2011 diff hist -3 IMPUTE2: 1000 Genomes Imputation Cookbook →Convert Genotype Data to Build 37
- 05:31, 5 August 2011 diff hist +1,441 IMPUTE2: 1000 Genomes Imputation Cookbook →Convert Genotype Data to Build 37
- 05:21, 5 August 2011 diff hist +1,329 N IMPUTE2: 1000 Genomes Imputation Cookbook Created page with '= Introduction = == Authors == This page is based on a document prepared by Jian'an Luan, Alexander Teumer, Jing-Hua Zhao, Christian Fuchsberger and Cristen Willer for the GIAN…'
- 03:29, 28 July 2011 diff hist -1,671 Minimac: 1000 Genomes Imputation Cookbook
- 03:08, 28 July 2011 diff hist +461 MaCH: 1000 Genomes Imputation Cookbook current
- 03:02, 28 July 2011 diff hist +55 N 1000G Cookbook moved 1000G Cookbook to Minimac: 1000 Genomes Imputation Cookbook: Switched to more informative title current
- 03:02, 28 July 2011 diff hist 0 m Minimac: 1000 Genomes Imputation Cookbook moved 1000G Cookbook to Minimac: 1000 Genomes Imputation Cookbook: Switched to more informative title
- 14:54, 21 July 2011 diff hist +1 Bar Harbor Statistical Genetics Workshop →Web Resources current
- 14:53, 21 July 2011 diff hist 0 Bar Harbor Statistical Genetics Workshop →Web Resources
- 13:47, 21 July 2011 diff hist +583 Bar Harbor Statistical Genetics Workshop →Questions to Consider
- 13:36, 21 July 2011 diff hist 0 Bar Harbor Statistical Genetics Workshop →Glusose Data Set
- 20:32, 24 June 2011 diff hist +12 Abecasis Lab →Staff
- 20:31, 24 June 2011 diff hist +18 Abecasis Lab →Graduate Students
- 20:27, 24 June 2011 diff hist +18 Abecasis Lab →Former Masters Students
- 20:26, 24 June 2011 diff hist -18 Abecasis Lab →Graduate Students
- 20:26, 24 June 2011 diff hist +10 Abecasis Lab →Former Masters Students
- 20:21, 24 June 2011 diff hist -4 Abecasis Lab →Staff
- 20:21, 24 June 2011 diff hist +20 Abecasis Lab →International Visitors
- 20:21, 24 June 2011 diff hist +25 Abecasis Lab →Research Fellows
- 20:20, 24 June 2011 diff hist +217 Abecasis Lab →Alumni
- 20:19, 24 June 2011 diff hist -41 Abecasis Lab →Current Members
- 20:18, 24 June 2011 diff hist +47 MediaWiki:Sidebar
- 20:17, 24 June 2011 diff hist +46 N 815 Redirected page to Biostatistics 615/815: Main Page current
- 20:16, 24 June 2011 diff hist +2 615 Redirected page to Biostatistics 615/815: Main Page current
- 20:16, 24 June 2011 diff hist +44 N 615 Created page with '#REDIRECT [Biostatistics 615/815: Main Page]'
- 20:15, 24 June 2011 diff hist +1 Class Notes
- 20:14, 24 June 2011 diff hist +99 Class Notes
- 20:13, 24 June 2011 diff hist +399 Class Notes →BIOSTAT 615 / 815 Statistical Computing
- 20:11, 24 June 2011 diff hist +84 Class Notes →BIOSTAT 666 Statistical and Numerical Methods in Human Genetics
- 02:55, 20 June 2011 diff hist +15 Abecasis Lab →Former Masters Students
- 07:48, 10 June 2011 diff hist +231 Nm User talk:Feng Zhang Welcome! current
- 07:48, 10 June 2011 diff hist +336 Nm User:Feng Zhang Creating user page with biography of new user. current
- 06:41, 26 April 2011 diff hist +328 Minimac →Imputation into Phased Haplotypes
- 06:36, 26 April 2011 diff hist +61 Minimac →Pre-phasing
- 06:18, 26 April 2011 diff hist -1 Minimac: 1000 Genomes Imputation Cookbook →Selecting a Subset of Samples
- 06:17, 26 April 2011 diff hist +51 Minimac: 1000 Genomes Imputation Cookbook →Shoud I use MaCH or minimac?
- 04:56, 26 April 2011 diff hist +97 Minimac: 1000 Genomes Imputation Cookbook →Quality Control
- 07:19, 8 April 2011 diff hist +23 Minimac: 1000 Genomes Imputation Cookbook →Quality Control
- 07:11, 8 April 2011 diff hist +613 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 07:07, 8 April 2011 diff hist 0 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 07:06, 8 April 2011 diff hist +74 Minimac: 1000 Genomes Imputation Cookbook →Shoud I use MaCH or minimac?
- 10:33, 25 March 2011 diff hist +119 METAL current
- 09:43, 25 March 2011 diff hist +2 METAL Documentation →History
- 09:43, 25 March 2011 diff hist +117 METAL Documentation →History
- 07:36, 25 March 2011 diff hist 0 METAL Command Reference →Genomic Control Correction of Input Statistics current
- 07:34, 25 March 2011 diff hist +891 METAL GENOMICCONTROL current
- 17:57, 10 March 2011 diff hist 0 Minimac →post-imputation association analysis
- 17:55, 10 March 2011 diff hist -10 Minimac →binary traits
- 17:55, 10 March 2011 diff hist +5 Minimac →X Chromosome Imputation
- 17:54, 10 March 2011 diff hist +155 Minimac →Imputation into Phased Haplotypes
- 17:51, 10 March 2011 diff hist +82 Minimac →NCBI build 36 / NCBI build 37
- 17:47, 10 March 2011 diff hist +3 Minimac →Imputation
- 17:46, 10 March 2011 diff hist +334 Minimac →Pre-phasing
- 17:58, 7 February 2011 diff hist -23 Rare variant tests →Summary of rare variant tests for sequence data
- 06:03, 22 January 2011 diff hist -104 Abecasis Group Awards →American Society of Human Genetics
- 05:50, 22 January 2011 diff hist +104 Abecasis Group Awards →American Society of Human Genetics
- 05:46, 22 January 2011 diff hist +2 Abecasis Group Awards →American Society of Human Genetics
- 12:43, 6 January 2011 diff hist -10 Abecasis Lab →Graduate Students
- 12:42, 6 January 2011 diff hist +177 Abecasis Lab →Former Doctoral Students
- 21:05, 2 December 2010 diff hist +246 N Biostatistics 666: Copy Number Variation Created page with '== Overview == Introduces the analysis of copy number variation. Principles behind the detection of copy number variation with binary segmentation models and hidden markov model…' current
- 21:03, 2 December 2010 diff hist +82 Biostatistics 666: Main Page →Class Notes
- 21:02, 2 December 2010 diff hist +60 N File:666.Zollner.CNV.pdf Guest lecture by Sebastian Zollner on Copy Number Variation. current
- 23:39, 1 December 2010 diff hist 0 N File:666.2010.05.pdf
- 23:32, 1 December 2010 diff hist +721 N Biostatistics 666: Analysis of Low Pass Sequence Data Created page with '== Objective == Discussion of the challenges involved in sequencing thousands of individual genomes. Introduction to the analysis of low pass sequence data. == Lecture Notes ==…' current
- 23:30, 1 December 2010 diff hist +91 Biostatistics 666: Main Page →Class Notes
- 15:57, 29 November 2010 diff hist +172 Biostatistics 666: Main Page →Older Lectures
- 15:57, 29 November 2010 diff hist -167 Biostatistics 666: Main Page →Class Notes
- 15:56, 29 November 2010 diff hist +160 Biostatistics 666: Whole Genome Sequencing →Lecture Notes
- 15:55, 29 November 2010 diff hist +98 N File:666.2010.04.pdf Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.
- 04:32, 29 November 2010 diff hist +67 Minimac →Download
- 04:31, 29 November 2010 diff hist +66 Minimac Undo revision 2568 by Cfuchsb (Talk)
- 04:30, 29 November 2010 diff hist -25 Minimac Undo revision 2569 by Cfuchsb (Talk)
- 19:10, 24 November 2010 diff hist 0 File:666.2010.03.pdf uploaded a new version of "File:666.2010.03.pdf"
- 07:21, 23 November 2010 diff hist +62 N Talk:Examples moved Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA current
- 07:21, 23 November 2010 diff hist 0 m Talk:Examples of Read Mapping with Karma and BWA moved Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA current
- 07:21, 23 November 2010 diff hist +57 N Examples moved Examples to Examples of Read Mapping with Karma and BWA current
- 07:21, 23 November 2010 diff hist 0 m Examples of Read Mapping with Karma and BWA moved Examples to Examples of Read Mapping with Karma and BWA
- 07:18, 23 November 2010 diff hist +596 N Biostatistics 666: Genotype Imputation Created page with '== Overview == Genotype imputation is one of the most commonly used tools for the analysis of genomewide association studies. This lecture introduces the basic ideas behind geno…'
- 07:15, 23 November 2010 diff hist +76 Biostatistics 666: Main Page →Class Notes
- 07:14, 23 November 2010 diff hist +116 N File:666.2010.03.pdf Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.
- 04:17, 23 November 2010 diff hist +4 RelativeFinder →Current Limitations and Todo List current
- 03:47, 18 November 2010 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf": Minor refinements to axis.
- 08:59, 16 November 2010 diff hist 0 File:666.2010.02.pdf uploaded a new version of "File:666.2010.02.pdf": Fixes minor errors.
- 08:59, 16 November 2010 diff hist 0 File:666.16.pdf uploaded a new version of "File:666.16.pdf": Updated version of lecture with more detailed review of ASP analysis
- 13:19, 12 November 2010 diff hist +32 N User talk:Goncalo Created page with 'Is there anything to talk about?' current
- 03:08, 11 November 2010 diff hist +6 Biostatistics 666: Linkage Analysis in Sibling Pairs →Slides
- 03:08, 11 November 2010 diff hist +665 N Biostatistics 666: Linkage Analysis in Sibling Pairs Created page with '== Outline == This lecture introduces Neil Risch's Maximum Lod Score (MLS) test for linkage and its refinement using Peter Holman's possible triangle constraint. == Slides == …'
- 03:02, 11 November 2010 diff hist +222 Biostatistics 666: Main Page →Class Notes
- 02:59, 11 November 2010 diff hist +62 N File:666.2010.02.pdf Lecture describing Risch's MLS and Holman's Possible Triangle.
- 16:12, 10 November 2010 diff hist -1 Minimac →Download
- 11:07, 9 November 2010 diff hist 0 File:666.2010.01.pdf uploaded a new version of "File:666.2010.01.pdf": Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version ** current
- 06:23, 9 November 2010 diff hist +6 Biostatistics 666: Power of Genomewide Association Studies →Lecture Notes
- 06:23, 9 November 2010 diff hist +541 N Biostatistics 666: Power of Genomewide Association Studies Created page with '== Objective == This lecture discusses power calculations in the context of genomewide association studies. It also introduces the concept of two stage designs and the tradeoffs…'
- 06:19, 9 November 2010 diff hist 0 N File:666.2010.01.pdf
- 06:18, 9 November 2010 diff hist +95 Biostatistics 666: Main Page →Class Notes
- 10:23, 28 October 2010 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf": Fixed a small typo. Compared to original version, this one also includes slightly more informative titles.
- 08:14, 28 October 2010 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf": Minor update to include kinship coefficients.
- 04:30, 26 October 2010 diff hist +237 Biostatistics 666: Association Tests in Structured Populations →Overview current
- 04:28, 26 October 2010 diff hist +82 Biostatistics 666: Association Tests in Structured Populations →Recommended Reading
- 04:27, 26 October 2010 diff hist 0 File:666.13.pdf uploaded a new version of "File:666.13.pdf": Added a summary slide at the beginning. current
- 04:18, 26 October 2010 diff hist 0 File:666.13.pdf uploaded a new version of "File:666.13.pdf": Updated lecture to include QQ plots, brief mention of principal component analysis.
- 15:05, 25 October 2010 diff hist +244 Abecasis Group Awards →American Society of Human Genetics
- 15:22, 22 October 2010 diff hist +2 Genotype Likelihood Based Allele Balance →Calculation current
- 15:21, 22 October 2010 diff hist +20 Genotype Likelihood Based Allele Balance →Calculation
- 15:19, 22 October 2010 diff hist -5 Genotype Likelihood Based Allele Balance →Calculation
- 15:18, 22 October 2010 diff hist -1 Genotype Likelihood Based Allele Balance →Calculation
- 15:18, 22 October 2010 diff hist +97 Genotype Likelihood Based Allele Balance →Inputs
- 15:17, 22 October 2010 diff hist +513 N Genotype Likelihood Based Allele Balance Created page with 'A statistic developed by Dr. Tom Blackwell. == Inputs == ; '''depth''' : at each site ; lrr : phred-scaled likelihood of observed bases given reference genotype ; lsr : phr…'
- 09:59, 21 October 2010 diff hist +341 Minimac Diagnostics →Basic Descriptors
- 09:55, 21 October 2010 diff hist +1,160 N Minimac Diagnostics Created page with ''''minimac''' is a tool for imputation of missing genotypes into phased haplotypes. At the end of each run, minimac generates summaries of imputation quality and stores t…'
- 09:49, 18 October 2010 diff hist +46 Biostatistics 666: Main Page →Problem Set Solutions
- 19:13, 12 October 2010 diff hist +3 Minimac →Running Minimac
- 19:13, 12 October 2010 diff hist +13 Minimac →Running MaCH
- 19:01, 12 October 2010 diff hist 0 File:666.12.pdf uploaded a new version of "File:666.12.pdf": Typo fixes.
- 07:58, 12 October 2010 diff hist 0 File:666.12.pdf uploaded a new version of "File:666.12.pdf": Minor update.
- 04:06, 12 October 2010 diff hist 0 Minimac
- 04:05, 12 October 2010 diff hist +54 Minimac →Questions and Comments
- 04:03, 12 October 2010 diff hist +89 Minimac →Multiprocessor Version
- 04:02, 12 October 2010 diff hist -2 Minimac →Download
- 04:01, 12 October 2010 diff hist +615 Minimac →Download
- 03:55, 12 October 2010 diff hist -2 Minimac →Related Pages
- 03:54, 12 October 2010 diff hist +6 Minimac →Your Own Data
- 03:53, 12 October 2010 diff hist +18 Minimac →Running Minimac
- 03:51, 12 October 2010 diff hist -14 Minimac →Getting Started
- 03:51, 12 October 2010 diff hist -6 Minimac →Release Date
- 03:50, 12 October 2010 diff hist -2 Minimac →Performance
- 03:50, 12 October 2010 diff hist +16 Minimac →Running Minimac
- 03:48, 12 October 2010 diff hist +1,307 Minimac →Getting Started
- 03:36, 12 October 2010 diff hist +24 Minimac
- 03:34, 12 October 2010 diff hist -73 Minimac →Parameters
- 03:32, 12 October 2010 diff hist +399 Minimac →Parameters
- 03:24, 12 October 2010 diff hist +39 Minimac →Parameters
- 03:22, 12 October 2010 diff hist +45 Minimac →Parameters
- 03:20, 12 October 2010 diff hist -10 Minimac →Parameters
- 03:19, 12 October 2010 diff hist +12 Minimac →Parameters
- 00:34, 12 October 2010 diff hist +3 Biostatistics 666: Haplotype Association Tests →Objective current
- 00:33, 12 October 2010 diff hist +2 Biostatistics 666: Haplotype Association Tests →Recommended Reading
- 00:33, 12 October 2010 diff hist -2 Biostatistics 666: Haplotype Association Tests →Recommended Reading
- 00:32, 12 October 2010 diff hist +176 Biostatistics 666: Haplotype Association Tests →Recommended Reading
- 22:31, 7 October 2010 diff hist +2,102 N Minimac Command Reference Created page with 'Minimac runs are controled by a series of command line parameters that specify input file names, an initial model for recombination and error rates, an optional series of ite…'
- 12:11, 7 October 2010 diff hist +475 Minimac →Performance
- 08:57, 7 October 2010 diff hist +99 Biostatistics 666: Main Page →Scheduling
- 04:03, 7 October 2010 diff hist +180 Biostatistics 666: Main Page →Scheduling
- 03:54, 7 October 2010 diff hist +1 Biostatistics 666: Introduction to the E-M Algorithm →Slides
- 03:53, 7 October 2010 diff hist 0 File:666.11.pdf uploaded a new version of "File:666.11.pdf": Minor typos fixed. current
- 02:01, 7 October 2010 diff hist +63 Abecasis Group Awards →Goncalo's Awards
- 02:00, 7 October 2010 diff hist +127 Abecasis Group Awards →European Society of Human Genetics
- 01:58, 7 October 2010 diff hist +150 Abecasis Group Awards →American Society of Human Genetics
- 01:51, 5 October 2010 diff hist 0 File:666.09.pdf uploaded a new version of "File:666.09.pdf": Fixes several typos. current
- 01:51, 5 October 2010 diff hist 0 File:666.09.Master.pdf uploaded a new version of "File:666.09.Master.pdf": Minor clarification of different uses of N. current
- 10:10, 4 October 2010 diff hist 0 Minimac →Your Own Data
- 10:07, 4 October 2010 diff hist +2 Minimac →Your Own Data
- 09:57, 4 October 2010 diff hist -125 Biostatistics 666: Main Page →Problem Set Solutions
- 09:56, 4 October 2010 diff hist -2 Biostatistics 666: Main Page →Problem Set Solutions
- 03:47, 3 October 2010 diff hist +1 Fst →Formulae current
- 03:46, 3 October 2010 diff hist +7 Fst →Formulae
- 03:46, 3 October 2010 diff hist +175 Fst →Formulae
- 03:41, 3 October 2010 diff hist +163 Fst
- 03:39, 3 October 2010 diff hist +453 N Fst Created page with ''''F<sub>st</sub>''' is a measure of population divergence. It measures the reduction in heterozygosity in a subdivided population compared to that in large, random mating popula…'
- 15:10, 30 September 2010 diff hist -103 Biostatistics 666: Haplotype Estimation Undo revision 2129 by Goncalo (Talk)
- 15:09, 30 September 2010 diff hist +103 Biostatistics 666: Haplotype Estimation
- 13:03, 30 September 2010 diff hist -1 Minimac
- 13:01, 30 September 2010 diff hist -3 Minimac →Performance
- 13:00, 30 September 2010 diff hist -12 Minimac →Performance
- 12:53, 30 September 2010 diff hist +10 Minimac →Performance
- 12:52, 30 September 2010 diff hist +689 Minimac
- 08:35, 30 September 2010 diff hist +7 Biostatistics 666: Maximum Likelihood Allele Frequency Estimation →Slides
- 08:29, 30 September 2010 diff hist +166 Biostatistics 666: Maximum Likelihood Allele Frequency Estimation →Slides
- 08:28, 30 September 2010 diff hist +102 N File:666.09.Master.pdf Lecturer's slides for lecture on allele frequency estimation. Include solutions to in class exercises.
- 23:47, 29 September 2010 diff hist +36 Tramp →Where to get it current
- 08:44, 28 September 2010 diff hist 0 File:666.06.pdf uploaded a new version of "File:666.06.pdf"
- 20:04, 27 September 2010 diff hist +1,210 Biostatistics 666: Introduction to the Coalescent →Objective
- 13:33, 27 September 2010 diff hist -40 m SNP Call Set Properties Reverted edits by Mertcenk11 (Talk) to last revision by Goncalo
- 13:32, 27 September 2010 diff hist +8 Zlib
- 13:27, 27 September 2010 diff hist +794 N Zlib Created page with 'The '''zlib''' allows applications to conveniently read and write gzip compatible files. It was developed by Jean-Loupe Gailly and Mark Adler. == Linux == '''zlib''' is inc…'
- 12:48, 27 September 2010 diff hist +662 New Fugue →Download
- 14:04, 24 September 2010 diff hist +141 Tramp
- 11:33, 23 September 2010 diff hist +7 Minimac →Related Pages
- 14:43, 22 September 2010 diff hist -28 MaCH FAQ →How is AL1 defined? Which allele dosage is .dose/.mldose counting?
- 14:42, 22 September 2010 diff hist -23 MaCH FAQ →More questions?
- 14:42, 22 September 2010 diff hist +23 MaCH
- 14:41, 22 September 2010 diff hist +984 N Minimac Created page with ''''minimac''' is a low memory, computationally efficient implementation of the MaCH algorithm for genotype imputation. It is designed to work on phased genotypes and can handle v…'
- 07:52, 21 September 2010 diff hist +12 Biostatistics 666: Main Page →Course History
- 07:51, 21 September 2010 diff hist +421 Biostatistics 666: Introduction to the Coalescent →Objective
- 01:50, 21 September 2010 diff hist 0 File:666.04.pdf uploaded a new version of "File:666.04.pdf": Minor typos fixed.
- 09:50, 16 September 2010 diff hist +2 Biostatistics 666: Main Page →Office Hours
- 23:33, 15 September 2010 diff hist 0 File:666.04.pdf uploaded a new version of "File:666.04.pdf": Introductory lecture on the coalescent. This version fixes some minor typos.
- 14:33, 14 September 2010 diff hist +910 N NHLBI Exome Sequencing Project Created page with 'The '''NHLBI Exome Sequencing Project''' is using deep whole exome resequencing of >7,000 individuals to study genetic contributions to the risk of several heart, lung and blood …'
- 08:45, 14 September 2010 diff hist +92 Biostatistics 666: Main Page →Office Hours
- 02:25, 14 September 2010 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf"
- 02:24, 14 September 2010 diff hist 0 File:666.02.pdf uploaded a new version of "File:666.02.pdf" current
- 02:03, 14 September 2010 diff hist +75 Biostatistics 666: Linkage Disequilibrium →Background Reading
- 02:02, 14 September 2010 diff hist -12 Biostatistics 666: Linkage Disequilibrium
- 02:01, 14 September 2010 diff hist +384 Biostatistics 666: Linkage Disequilibrium →Objective
- 01:05, 9 September 2010 diff hist -1 Abecasis Lab →Former Research Fellows
- 23:21, 8 September 2010 diff hist +49 Main Page →High Level Tutorials
- 23:20, 8 September 2010 diff hist +6,058 N Talk:Evaluating a Read Mapper on Simulated Data Created page with 'This stuff was originally included in the main page, but seems pretty specific to our local uses, so I have moved it here, to the talk page. Probably even better to go into our i…' current
- 23:19, 8 September 2010 diff hist -5,867 Evaluating a Read Mapper on Simulated Data current
- 23:18, 8 September 2010 diff hist +14 Gzip
- 23:16, 8 September 2010 diff hist +39 Gzip File current
- 23:15, 8 September 2010 diff hist -14 Gzip
- 23:15, 8 September 2010 diff hist +2 Gzip
- 23:14, 8 September 2010 diff hist +12 Gzip
- 23:13, 8 September 2010 diff hist +162 Abecasis Lab →Mission Statement
- 23:11, 8 September 2010 diff hist +170 Main Page →Sequence Analysis Tools
- 23:08, 8 September 2010 diff hist 0 Main Page →Abecasis Group Meeting
- 23:07, 8 September 2010 diff hist -30 Main Page →Sequence Analysis Tools
- 23:07, 8 September 2010 diff hist +5 SNP Call Set Properties →Proportion of dbSNPs
- 23:06, 8 September 2010 diff hist -2 SNP Call Set Properties →Why Are Reciprocal Changes Not Equally Frequent?
- 23:06, 8 September 2010 diff hist +3,253 N SNP Call Set Properties Created page with 'There are typically a number of properties that we check in SNP call sets. This page gives some useful pointers on what these quantities are and what to look for. == Proportion …'
- 22:37, 8 September 2010 diff hist +84 Biostatistics 666: Hardy-Weinberg Equilibrium →Background Reading
- 22:34, 8 September 2010 diff hist 0 File:666.02.pdf uploaded a new version of "File:666.02.pdf"
- 10:14, 7 September 2010 diff hist +421 Biostatistics 666: Introductory Lecture current
- 08:54, 7 September 2010 diff hist +12 Biostatistics 666: Main Page →Target Audience
- 06:01, 7 September 2010 diff hist +91 Biostatistics 666: Introductory Lecture →Objective
- 05:59, 7 September 2010 diff hist -5 Biostatistics 666: Introductory Lecture →Objective
- 05:58, 7 September 2010 diff hist +6 Biostatistics 666: Introductory Lecture →Objective
- 05:57, 7 September 2010 diff hist +1,846 Biostatistics 666: Introductory Lecture →Objective
- 05:46, 7 September 2010 diff hist 0 File:666.01.pdf uploaded a new version of "File:666.01.pdf": Biostatistics 666 Introductory Lecture as of 2010/09/07 current
- 22:53, 2 September 2010 diff hist +30 Biostatistics 666: Main Page →Office Hours
- 22:45, 2 September 2010 diff hist -135 Biostatistics 666: Main Page →Scheduling
- 11:49, 25 August 2010 diff hist +129 Abecasis Group Awards →Goncalo's Awards
- 11:47, 25 August 2010 diff hist +288 Abecasis Group Awards →American Society of Human Genetics
- 16:54, 20 August 2010 diff hist +87 Abecasis Group Awards →American Society of Human Genetics
- 16:53, 20 August 2010 diff hist +334 N Abecasis Group Awards Created page with 'This is a record of awards won by group members. == American Society of Human Genetics == * Paul Scheet, Cotterman Award, American Society of Human Genetics 2006 * Yun Li, Pred…'
- 16:44, 20 August 2010 diff hist +30 Abecasis Lab →Really Useful Stuff
- 16:37, 17 August 2010 diff hist -2 Abecasis Lab →Really Useful Stuff
- 16:37, 17 August 2010 diff hist +70 Abecasis Lab →Really Useful Stuff
- 16:20, 17 August 2010 diff hist +83 Abecasis Lab
- 01:27, 14 August 2010 diff hist +26 GlfTrio →X Chromosome Variant Calling
- 01:26, 14 August 2010 diff hist +198 GlfTrio →X Chromosome Variant Calling
- 15:42, 13 August 2010 diff hist +43 Abecasis Lab →Graduate Students
- 13:18, 13 August 2010 diff hist -206 RelativeFinder →Current Limitations and Todo List
- 13:18, 13 August 2010 diff hist 0 RelativeFinder →Download
- 17:08, 12 August 2010 diff hist +178 RelativeFinder →Command Line Options
- 17:07, 12 August 2010 diff hist 0 RelativeFinder →Download
- 17:06, 12 August 2010 diff hist +694 RelativeFinder →Alternative Relationships
- 14:58, 22 July 2010 diff hist 0 Bar Harbor Statistical Genetics Workshop →Your Tasks