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Jump to navigationJump to search- 14:57, 25 September 2013 diff hist +508 N 830 - MarkovModel::CountErrors() Created page with "<source lang="cpp"> double MarkovModel::CountErrors(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if (observed == 0) re..." current
- 14:54, 25 September 2013 diff hist +487 N 830 - MarkovModel::CountRecombinants() Created page with "<source lang="cpp"> double MarkovModel::CountRecombinants(float * from, float * to, double r) { if (r == 0) return 0.0; double sum = 0.0; for (int i = 0; i ..." current
- 14:53, 25 September 2013 diff hist +135 Biostatistics 830 - Code Snippets →Code Snippets
- 14:50, 25 September 2013 diff hist +1,345 N 830 - MarkovModel::Impute() Created page with "<source lang="cpp"> void MarkovModel::Impute(char * major, char * observed, float * probs, char ** haplotypes, float ** freqs, int position) { d..." current
- 14:45, 25 September 2013 diff hist +33 Biostatistics 830 - Code Snippets →Code Snippets
- 14:45, 25 September 2013 diff hist +974 N 830 - MarkovModel::WalkRight() Created page with "<source lang="cpp"> void MarkovModel::WalkRight(char * major, char * observed, char ** haplotypes, float ** freqs) { float * swap; float * vector = new float [states]..." current
- 14:43, 25 September 2013 diff hist +36 Biostatistics 830 - Code Snippets →Code Snippets
- 14:42, 25 September 2013 diff hist +637 N 830 - MarkovModel::WalkLeft() Created page with "<source lang="cpp"> void MarkovModel::WalkLeft(char * observed, char ** haplotypes, float ** freqs) { // Initialize likelihoods at first position for (int i = 0; i < ..."
- 14:41, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist -36 830 - MarkovModel::Condition() current
- 14:40, 25 September 2013 diff hist +476 N 830 - MarkovModel::Condition() Created page with "<source lang="cpp"> void MarkovModel::Condition(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if ..."
- 14:40, 25 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:39, 25 September 2013 diff hist -202 830 - MarkovModel::Transpose() current
- 14:37, 25 September 2013 diff hist +767 N 830 - MarkovModel::Transpose() Created page with "<source lang="cpp"> void MarkovModel::Transpose(float * from, float * to, double r) { if (r == 0) for (int i = 0; i < states; i++) to[i] = from[i]; els..."
- 14:36, 25 September 2013 diff hist +2 Biostatistics 830 - Code Snippets →Code Snippets
- 14:36, 25 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 14:33, 25 September 2013 diff hist +72 Biostatistics 830: Main Page →Scheduling
- 14:33, 25 September 2013 diff hist 0 N File:Question Sheet - Li et al (2010) Gen Epid.pdf current
- 14:32, 25 September 2013 diff hist +81 Biostatistics 830: Main Page →Class Worksheets
- 14:32, 25 September 2013 diff hist 0 N File:Question Sheet - Howie et al (2012) Nat Genet.pdf current
- 14:31, 25 September 2013 diff hist +174 Biostatistics 830: Main Page →Scheduling
- 14:29, 25 September 2013 diff hist 0 N File:Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf current
- 11:00, 25 September 2013 diff hist +208 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 11:00, 25 September 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading
- 10:59, 25 September 2013 diff hist +82 Biostatistics 830 - Code Snippets →Li et al (2010) Genet Epidemiol
- 10:58, 25 September 2013 diff hist +1,613 Biostatistics 830: Main Page →Scheduling
- 15:56, 13 September 2013 diff hist -163 830 - Haplotyper::RandomSetup() current
- 15:07, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 15:06, 13 September 2013 diff hist -1 830 - Haplotyper::ImputeGenotypes()
- 15:06, 13 September 2013 diff hist +1,221 N 830 - Haplotyper::ImputeGenotypes() Created page with "</source lang="cpp"> void Haplotyper::ImputeGenotypes() { RewindMemoryPool(); // Process the last position RetrieveMemoryBlock(markers - 1); ImputeGenotypes(le..."
- 15:04, 13 September 2013 diff hist +41 Biostatistics 830 - Code Snippets →Code Snippets
- 15:02, 13 September 2013 diff hist +31 830 - Haplotyper::ScoreLeftConditional()
- 15:01, 13 September 2013 diff hist +797 N 830 - Haplotyper::ScoreLeftConditional() Created page with "void Haplotyper::ScoreLeftConditional() { ResetMemoryPool(); GetMemoryBlock(0); SetupPrior(leftMatrices[0]); ConditionOnData(leftMatrices[0], 0, current_genoty..."
- 15:00, 13 September 2013 diff hist +46 Biostatistics 830 - Code Snippets →Code Snippets
- 14:58, 13 September 2013 diff hist 0 830 - Haplotyper::ConditionOnData() current
- 14:58, 13 September 2013 diff hist +666 N 830 - Haplotyper::ConditionOnData() Created page with "<source code="cpp"> void Haplotyper::ConditionOnData(float * matrix, int marker, char genotype) { // We treat missing genotypes as uninformative about the mosaic's //..."
- 14:56, 13 September 2013 diff hist 0 830 - Haplotyper::SetupPrior() current
- 14:56, 13 September 2013 diff hist +324 N 830 - Haplotyper::SetupPrior() Created page with "<source code="cpp"> void Haplotyper::SetupPrior(float * matrix) { float prior = 1.0 / (states * states); for (int i = 0; i < states; i++) { for (int j = ..."
- 14:55, 13 September 2013 diff hist +77 Biostatistics 830 - Code Snippets →Code Snippets
- 14:52, 13 September 2013 diff hist +1,947 N 830 - Haplotyper::Transpose() Created page with "<source lang="cpp"> void Haplotyper::Transpose(float * source, float * dest, float theta) { // *source and *dest store a vector with likelihood information for each pos..." current
- 14:48, 13 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:48, 13 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Code Snippets
- 14:47, 13 September 2013 diff hist +91 830 - Haplotyper::RandomSetup()
- 14:46, 13 September 2013 diff hist +1,837 N 830 - Haplotyper::RandomSetup() Created page with "<source lang="cpp"> void Haplotyper::RandomSetup(Random * rand) { // access two arrays... // genotypes[i][j] includes genotypes for each individual // i..."
- 14:42, 13 September 2013 diff hist +37 Biostatistics 830 - Code Snippets →Code Snippets
- 14:38, 13 September 2013 diff hist +263 N Biostatistics 830 - Code Snippets Created page with "== Li et al (2010) Genet Epidemiol == === Full Citation === Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotyp..."
- 14:37, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 14:37, 13 September 2013 diff hist +22 Biostatistics 830: Main Page →Required Reading
- 10:50, 9 September 2013 diff hist -2 Abecasis Group Awards
- 10:50, 9 September 2013 diff hist +129 Abecasis Group Awards →Goncalo's Awards
- 15:10, 4 September 2013 diff hist -12 Biostatistics 830: Main Page →Required Reading
- 15:09, 4 September 2013 diff hist +175 Biostatistics 830: Main Page →Required Reading
- 15:08, 4 September 2013 diff hist +162 Biostatistics 830: Main Page →Required Reading
- 15:05, 4 September 2013 diff hist +51 Biostatistics 830: Main Page →Required Reading
- 10:32, 4 September 2013 diff hist -3 Biostatistics 830: Main Page →Required Reading
- 10:31, 4 September 2013 diff hist +26 Biostatistics 830: Main Page →Required Reading
- 10:30, 4 September 2013 diff hist +130 Biostatistics 830: Main Page →Required Reading
- 10:25, 4 September 2013 diff hist +2,526 Biostatistics 830: Main Page →Required Reading
- 09:27, 4 September 2013 diff hist +2,396 N Biostatistics 830: Core Competencies Created page with "The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its syllabus. This is the list of competencies cover..." current
- 09:24, 4 September 2013 diff hist -198 Biostatistics 666: Main Page
- 09:22, 4 September 2013 diff hist +2,344 N Biostatistics 830: Main Page Created page with "== Objective == Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies are changing rapidly with the availab..."
- 09:15, 4 September 2013 diff hist +42 N 830 Redirected page to Biostatistics 830: Main Page current
- 09:15, 4 September 2013 diff hist +42 N Biostatistics 830 Redirected page to Biostatistics 830: Main Page current
- 09:13, 4 September 2013 diff hist +39 MediaWiki:Sidebar
- 12:33, 12 August 2013 diff hist +27 Short Workshops →Low Pass Whole Genomes
- 12:32, 12 August 2013 diff hist +137 Short Workshops
- 01:51, 3 August 2013 diff hist +44 Goncalo Abecasis →2013 Overton Prize current
- 01:50, 3 August 2013 diff hist -2 Goncalo Abecasis
- 01:50, 3 August 2013 diff hist +66 Goncalo Abecasis →2013 Overton Prize
- 12:10, 2 August 2013 diff hist +100 Goncalo Abecasis →See Also
- 12:07, 2 August 2013 diff hist 0 N File:2013.07 - Overton Award Final.pdf current
- 10:17, 2 August 2013 diff hist +114 Abecasis Group Awards →American Society of Human Genetics
- 15:24, 12 June 2013 diff hist +37 Dajiang Liu →Rare Metal and Rare Metal Worker
- 15:23, 12 June 2013 diff hist +228 Dajiang Liu
- 15:21, 12 June 2013 diff hist +40 Scott Vrieze
- 15:20, 12 June 2013 diff hist 0 N File:Scott Vrieze.jpg current
- 12:14, 12 June 2013 diff hist +17 Dajiang Liu
- 03:30, 12 June 2013 diff hist +324 Exome Chip Design →Cautious Sites
- 11:42, 11 June 2013 diff hist +187 N Dajiang Liu Created page with 'Dajiang Liu is currently a research fellow working on rare variant analysis methods with Goncalo Abecasis. Previously, he completed his Ph.D. at Rice University working with Suza…'
- 11:41, 11 June 2013 diff hist +4 Abecasis Lab →Research Fellows
- 04:29, 10 June 2013 diff hist +12 Abecasis Lab →Staff
- 04:28, 10 June 2013 diff hist +13 Abecasis Lab →Graduate Students
- 14:56, 7 June 2013 diff hist +118 Goncalo Abecasis: Interview with Christiana Fogg current
- 12:24, 5 June 2013 diff hist +6 Abecasis Group Awards →Goncalo's Awards
- 12:22, 5 June 2013 diff hist -8 Abecasis Group Awards →Goncalo's Awards
- 12:21, 5 June 2013 diff hist +115 Abecasis Group Awards →Goncalo's Awards
- 18:28, 21 May 2013 diff hist -9 Trial Enrichment →Download current
- 18:27, 21 May 2013 diff hist +48 VerifyBamID →Interpreting output files
- 21:08, 15 May 2013 diff hist +874 Goncalo Abecasis
- 18:32, 15 May 2013 diff hist +18,913 N Goncalo Abecasis: Interview with Christiana Fogg Created page with 'In March 2013, I was awarded the Overton Prize by the International Society for Computational Biology (ISCB). I am not sure I deserve it and, perhaps to double check if they had …'
- 18:23, 15 May 2013 diff hist +70 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist +1 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist -2 Goncalo Abecasis
- 00:20, 13 May 2013 diff hist +6 TrioCaller →Introduction
- 00:19, 13 May 2013 diff hist +16 TrioCaller →Note: if you are interesting in detecting de novo mutations, or are working on a small number of families with high coverage data (e.g. exome sequencing), please first try our sister program Polymutt .
- 00:14, 13 May 2013 diff hist -34 TrioCaller →Introduction
- 10:08, 8 March 2013 diff hist +231 Nm User talk:Dajiang Liu Welcome! current
- 10:08, 8 March 2013 diff hist +1,163 Nm User:Dajiang Liu Creating user page with biography of new user. current
- 21:51, 7 March 2013 diff hist -83 Tutorial: RAREMETAL →STEP 1: Install Software and Download Example Data Sets