User contributions
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Jump to navigationJump to search- 09:51, 29 January 2014 diff hist -7 Minimac →using a VCF reference panel
- 08:46, 29 January 2014 diff hist +541 Tutorial: RAREMETAL
- 18:19, 16 January 2014 diff hist +21 Abecasis Lab →Graduate Students
- 11:38, 16 December 2013 diff hist +13 Abecasis Lab →Former Masters Students
- 11:37, 16 December 2013 diff hist -1 Abecasis Lab →Graduate Students
- 16:08, 6 December 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 16:08, 6 December 2013 diff hist +83 Biostatistics 830: Main Page →Class Worksheets
- 16:08, 6 December 2013 diff hist 0 N File:Question Sheet - Jun et al (2012) American Journal of Human Genetics.pdf current
- 16:07, 4 December 2013 diff hist 0 Rvtests →Genotyep filters
- 15:44, 4 December 2013 diff hist +1 RAREMETAL Documentation →Where to Download
- 13:30, 4 December 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 13:30, 4 December 2013 diff hist +82 Biostatistics 830: Main Page →Class Worksheets
- 13:29, 4 December 2013 diff hist 0 N File:Question Sheet - Wu et al (2011) American Journal of Human Genetics.pdf current
- 18:03, 26 November 2013 diff hist +64 Biostatistics 830: Main Page →Class Worksheets
- 17:55, 26 November 2013 diff hist 0 N File:Question Sheet - Liu et al (2013) Nature Genetics.pdf
- 16:33, 25 November 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 16:33, 25 November 2013 diff hist +93 Biostatistics 830: Main Page →Class Worksheets
- 16:10, 25 November 2013 diff hist +94 Biostatistics 830: Main Page →Class Worksheets
- 16:01, 25 November 2013 diff hist 0 N File:Question Sheet - Li and Durbin (2011) Nature.pdf current
- 18:19, 18 November 2013 diff hist +28 Abecasis Group Awards
- 18:19, 18 November 2013 diff hist +152 Abecasis Group Awards →International Genetic Epidemiology Society
- 16:10, 12 November 2013 diff hist -1 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist +7 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist +60 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist 0 N File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf
- 04:01, 7 November 2013 diff hist +146 Biostatistics 830: Main Page →Class Worksheets
- 04:00, 7 November 2013 diff hist 0 File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf Goncalo uploaded a new version of "File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf": Removed unnecessary second page. current
- 03:58, 7 November 2013 diff hist 0 File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf Goncalo uploaded a new version of "File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf": Fixed typos in code example. current
- 03:57, 7 November 2013 diff hist 0 N File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf
- 12:19, 30 October 2013 diff hist +78 Biostatistics 830: Main Page →Class Worksheets
- 12:19, 30 October 2013 diff hist 0 N File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf
- 12:18, 30 October 2013 diff hist +24 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 28 October 2013 diff hist +6 830 - MaqIndex::LookupWord() current
- 13:58, 28 October 2013 diff hist +268 N 830 - BestAlignment::IterateCache() Created page with "<source lang="cpp"> unsigned int BestAlignment::IterateCache(unsigned int key) { int h = (key * PRIME) % cacheSize; while (cache[h] != -1 && cache[h] ..." current
- 13:53, 28 October 2013 diff hist +4 Biostatistics 830 - Code Snippets →Code Snippets current
- 13:53, 28 October 2013 diff hist +51 N 830 - BestAlignment::ClearCache() Goncalo moved page 830 - BestAlignment::ClearCache() to 830 - BestAlignment::ClearPositions() current
- 13:53, 28 October 2013 diff hist 0 m 830 - BestAlignment::ClearPositions() Goncalo moved page 830 - BestAlignment::ClearCache() to 830 - BestAlignment::ClearPositions() current
- 13:52, 28 October 2013 diff hist +142 N 830 - BestAlignment::ClearPositions() Created page with "<source lang="cpp"> void BestAlignment::ClearPositions() { cacheItems = 0; for (int i = 0; i < cacheSize; i++) cache[i] = -1; } </source>"
- 13:51, 28 October 2013 diff hist +265 N 830 - BestAlignment::isNewPosition() Created page with "<source lang="cpp"> bool BestAlignment::isNewPosition(unsigned int pos) { int h = IterateCache(pos); if (cache[h] == pos) return false; cache[h] = pos; cacheItems++; ..." current
- 13:49, 28 October 2013 diff hist +122 Biostatistics 830 - Code Snippets →Code Snippets
- 13:47, 28 October 2013 diff hist +32 830 - BestAlignment::EvaluateAlignment() (detailed comparison) current
- 13:47, 28 October 2013 diff hist +584 N 830 - BestAlignment::EvaluateAlignment() (detailed comparison) Created page with "void BestAlignment::EvaluateAlignment(String & reference, FastQ & read, unsigned int pos, bool fwd) { if (pos < 0 || read.Length() + pos > reference.Length()) return; if ..."
- 13:46, 28 October 2013 diff hist +350 N 830 - BestAlignment::EvaluateAlignment() (main loop) Created page with "<source lang="cpp"> void BestAlignment::EvaluateAlignment(MaqIndex & index, FastQ & read, unsigned int offset, bool fwd) { unsigned int start, stop; index.LookupWord(read...." current
- 13:45, 28 October 2013 diff hist +32 830 - BestAlignment::MaqAlignment() current
- 13:44, 28 October 2013 diff hist +1,224 N 830 - BestAlignment::MaqAlignment() Created page with "void BestAlignment::MaqAlignment(MaqIndex & index1, MaqIndex & index2, MaqIndex & index3, FastQ & read) { position = -1; sumQ = mapQ = 0; mismatches = read.Length(); forwa..."
- 13:44, 28 October 2013 diff hist +167 Biostatistics 830 - Code Snippets →Code Snippets
- 13:39, 28 October 2013 diff hist +500 N 830 - MaqIndex::GetWord() Created page with "<source lang="cpp"> long long MaqIndex::GetWord(String & sequence, unsigned int position) { long long word = 0; if (position + mask.Length() > sequence.Length()) return -..." current
- 13:38, 28 October 2013 diff hist +613 N 830 - MaqIndex::BuildIndex() Created page with "<source lang="cpp"> void MaqIndex::BuildIndex() { // This function could use quite a lot of memory ... // 4 bytes per word // 4 bytes per position // 4 bytes per ..." current
- 13:36, 28 October 2013 diff hist +1,079 N 830 - MaqIndex::LookupWord() Created page with "<source lang="cpp"> bool MaqIndex::LookupWord(String & sequence, int offset, unsigned int & firstOccurrence, unsigned int & lastOccurrence) { firstOccurrence = 0; lastOccurr..."
- 13:34, 28 October 2013 diff hist -2 830 - MaqIndex::CompareToIndex() current
- 13:34, 28 October 2013 diff hist +345 N 830 - MaqIndex::CompareToIndex() Created page with "<source lang="cpp"> int MaqIndex::CompareToIndex(String & sequence, unsigned int offset, unsigned int index) { index = sortedPositions[index]; for (unsigned int i = 0; i <..."
- 13:33, 28 October 2013 diff hist +137 Biostatistics 830 - Code Snippets →Code Snippets
- 13:29, 28 October 2013 diff hist +2,285 N 830 - BasicMapper::main() Created page with "<source lang="cpp"> int main(int argc, char ** argv) { // Record start time for this run time_t start = time(NULL); // This function summarizes available options and proc..." current
- 13:28, 28 October 2013 diff hist +266 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 13:26, 28 October 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading
- 12:45, 25 October 2013 diff hist +220 Abecasis Lab →Former Doctoral Students
- 14:48, 14 October 2013 diff hist +95 RAREMETAL Documentation →Useful Wiki Pages
- 05:11, 11 October 2013 diff hist +93 Biostatistics 830: Main Page →Class Worksheets
- 05:10, 11 October 2013 diff hist 0 N File:Question Sheet - Li et al (2008) Genome Research.pdf current
- 11:13, 3 October 2013 diff hist +53 N RAREMETAL-SOFTWARE Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current
- 11:13, 3 October 2013 diff hist 0 m Rare Variant Analysis and Meta-Analysis Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current
- 16:16, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (edge) current
- 16:15, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (internal) current
- 16:03, 2 October 2013 diff hist 0 830 - Haplotyper::SampleOneHaplotype() current
- 15:55, 2 October 2013 diff hist -1 830 - Haplotyper::SummarizeOptions() current
- 15:06, 2 October 2013 diff hist +574 830 - MINIMAC::main() current
- 14:57, 2 October 2013 diff hist +421 830 - MINIMAC::main()
- 14:52, 2 October 2013 diff hist -1 830 - MINIMAC::main()
- 14:52, 2 October 2013 diff hist +11,013 N 830 - MINIMAC::main() Created page with "</source lang="cpp"> int main(int argc, char ** argv) { time_t start = time(NULL); printf("MiniMac - Imputation into phased haplotypes\n" "(c) 2010-2011 Goncalo..."
- 14:51, 2 October 2013 diff hist +27 Biostatistics 830 - Code Snippets →Code Snippets
- 14:31, 2 October 2013 diff hist +15 Biostatistics 830 - Code Snippets →Code Snippets
- 14:31, 2 October 2013 diff hist +75 N 830 - Haplotyper::ScoreLeftConditional smart() Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
- 14:31, 2 October 2013 diff hist 0 m 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
- 14:29, 2 October 2013 diff hist +215 830 - Haplotyper::ImputeGenotypes() (internal)
- 14:28, 2 October 2013 diff hist +645 N 830 - Haplotyper::ImputeGenotypes() (internal) Created page with "void Haplotyper::ImputeGenotypes(float * matrix1, float * matrix2, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (int i..."
- 14:26, 2 October 2013 diff hist +673 N 830 - Haplotyper::ImputeGenotypes() (edge) Created page with "<source lang="cpp"> void Haplotyper::ImputeGenotypes(float * matrix, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (in..."
- 14:25, 2 October 2013 diff hist +100 Biostatistics 830 - Code Snippets →Code Snippets
- 14:19, 2 October 2013 diff hist -498 830 - Haplotyper::ImputeGenotypes() current
- 14:16, 2 October 2013 diff hist -1 830 - Haplotyper::SampleOneHaplotype()
- 14:15, 2 October 2013 diff hist +198 830 - Haplotyper::SampleOneHaplotype()
- 14:14, 2 October 2013 diff hist +316 N 830 - Haplotyper::SampleOneHaplotype() Created page with "<source lang="cpp"> float Haplotyper::SampleOneHaplotype(float * vector, double first, double & second, float & choice) { for (second = 0; second < states; second++) ..."
- 14:14, 2 October 2013 diff hist +44 Biostatistics 830 - Code Snippets →Code Snippets
- 14:13, 2 October 2013 diff hist +2 830 - Haplotyper::SummarizeOptions()
- 14:13, 2 October 2013 diff hist +1,150 N 830 - Haplotyper::SummarizeOptions() Created page with "<code lang="cpp"> float Haplotyper::SummarizeOptions(float * vector, float ** left, float ** right, float theta, int first, int second) { right[0][0] = (1. - theta) * (..."
- 14:12, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
- 14:11, 2 October 2013 diff hist +30 830 - Haplotyper::SampleChromosomes() current
- 14:11, 2 October 2013 diff hist +1,350 N 830 - Haplotyper::SampleChromosomes() Created page with " void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; SampleHaplotypes(leftMat..."
- 14:10, 2 October 2013 diff hist +9 830 - Haplotyper::SampleHaplotypes() current
- 14:08, 2 October 2013 diff hist -589 830 - Haplotyper::SampleHaplotypes()
- 14:08, 2 October 2013 diff hist +43 Biostatistics 830 - Code Snippets →Code Snippets
- 14:06, 2 October 2013 diff hist +4 830 - Haplotyper::SampleHaplotypes()
- 14:05, 2 October 2013 diff hist +1,364 N 830 - Haplotyper::SampleHaplotypes() Created page with "<source lang="cpp"> void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; Sampl..."
- 14:05, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
- 13:30, 2 October 2013 diff hist +1 830 - Haplotyper::ScoreLeftConditional() current
- 13:27, 2 October 2013 diff hist -376 830 - Haplotyper::ScoreLeftConditional()
- 13:26, 2 October 2013 diff hist +966 N 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Created page with "<source lang="cpp"> // This version of the ScoreLeftConditional() function deals with sites // where no genotypes are observed a little more efficiently. // void Haplotyper:..."
- 13:25, 2 October 2013 diff hist +52 Biostatistics 830 - Code Snippets →Code Snippets
- 02:03, 27 September 2013 diff hist -16 Abecasis Lab →Staff
- 01:30, 27 September 2013 diff hist 0 Abecasis Lab →Former Research Fellows
- 15:01, 25 September 2013 diff hist +1,257 N 830 - MarkovModel::CountErrorsAndRecombinants() Created page with "<source lang="cpp"> void MarkovModel::CountErrorsAndRecombinants(char * observed, char ** haplotypes, float ** freq) { float * swap; float * vector = new float [state..." current
- 14:57, 25 September 2013 diff hist +508 N 830 - MarkovModel::CountErrors() Created page with "<source lang="cpp"> double MarkovModel::CountErrors(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if (observed == 0) re..." current
- 14:54, 25 September 2013 diff hist +487 N 830 - MarkovModel::CountRecombinants() Created page with "<source lang="cpp"> double MarkovModel::CountRecombinants(float * from, float * to, double r) { if (r == 0) return 0.0; double sum = 0.0; for (int i = 0; i ..." current
- 14:53, 25 September 2013 diff hist +135 Biostatistics 830 - Code Snippets →Code Snippets
- 14:50, 25 September 2013 diff hist +1,345 N 830 - MarkovModel::Impute() Created page with "<source lang="cpp"> void MarkovModel::Impute(char * major, char * observed, float * probs, char ** haplotypes, float ** freqs, int position) { d..." current
- 14:45, 25 September 2013 diff hist +33 Biostatistics 830 - Code Snippets →Code Snippets
- 14:45, 25 September 2013 diff hist +974 N 830 - MarkovModel::WalkRight() Created page with "<source lang="cpp"> void MarkovModel::WalkRight(char * major, char * observed, char ** haplotypes, float ** freqs) { float * swap; float * vector = new float [states]..." current
- 14:43, 25 September 2013 diff hist +36 Biostatistics 830 - Code Snippets →Code Snippets
- 14:42, 25 September 2013 diff hist +637 N 830 - MarkovModel::WalkLeft() Created page with "<source lang="cpp"> void MarkovModel::WalkLeft(char * observed, char ** haplotypes, float ** freqs) { // Initialize likelihoods at first position for (int i = 0; i < ..."
- 14:41, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist -36 830 - MarkovModel::Condition() current
- 14:40, 25 September 2013 diff hist +476 N 830 - MarkovModel::Condition() Created page with "<source lang="cpp"> void MarkovModel::Condition(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if ..."
- 14:40, 25 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:39, 25 September 2013 diff hist -202 830 - MarkovModel::Transpose() current
- 14:37, 25 September 2013 diff hist +767 N 830 - MarkovModel::Transpose() Created page with "<source lang="cpp"> void MarkovModel::Transpose(float * from, float * to, double r) { if (r == 0) for (int i = 0; i < states; i++) to[i] = from[i]; els..."
- 14:36, 25 September 2013 diff hist +2 Biostatistics 830 - Code Snippets →Code Snippets
- 14:36, 25 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 14:33, 25 September 2013 diff hist +72 Biostatistics 830: Main Page →Scheduling
- 14:33, 25 September 2013 diff hist 0 N File:Question Sheet - Li et al (2010) Gen Epid.pdf current
- 14:32, 25 September 2013 diff hist +81 Biostatistics 830: Main Page →Class Worksheets
- 14:32, 25 September 2013 diff hist 0 N File:Question Sheet - Howie et al (2012) Nat Genet.pdf current
- 14:31, 25 September 2013 diff hist +174 Biostatistics 830: Main Page →Scheduling
- 14:29, 25 September 2013 diff hist 0 N File:Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf current
- 11:00, 25 September 2013 diff hist +208 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 11:00, 25 September 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading
- 10:59, 25 September 2013 diff hist +82 Biostatistics 830 - Code Snippets →Li et al (2010) Genet Epidemiol
- 10:58, 25 September 2013 diff hist +1,613 Biostatistics 830: Main Page →Scheduling
- 15:56, 13 September 2013 diff hist -163 830 - Haplotyper::RandomSetup() current
- 15:07, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 15:06, 13 September 2013 diff hist -1 830 - Haplotyper::ImputeGenotypes()
- 15:06, 13 September 2013 diff hist +1,221 N 830 - Haplotyper::ImputeGenotypes() Created page with "</source lang="cpp"> void Haplotyper::ImputeGenotypes() { RewindMemoryPool(); // Process the last position RetrieveMemoryBlock(markers - 1); ImputeGenotypes(le..."
- 15:04, 13 September 2013 diff hist +41 Biostatistics 830 - Code Snippets →Code Snippets
- 15:02, 13 September 2013 diff hist +31 830 - Haplotyper::ScoreLeftConditional()
- 15:01, 13 September 2013 diff hist +797 N 830 - Haplotyper::ScoreLeftConditional() Created page with "void Haplotyper::ScoreLeftConditional() { ResetMemoryPool(); GetMemoryBlock(0); SetupPrior(leftMatrices[0]); ConditionOnData(leftMatrices[0], 0, current_genoty..."
- 15:00, 13 September 2013 diff hist +46 Biostatistics 830 - Code Snippets →Code Snippets
- 14:58, 13 September 2013 diff hist 0 830 - Haplotyper::ConditionOnData() current
- 14:58, 13 September 2013 diff hist +666 N 830 - Haplotyper::ConditionOnData() Created page with "<source code="cpp"> void Haplotyper::ConditionOnData(float * matrix, int marker, char genotype) { // We treat missing genotypes as uninformative about the mosaic's //..."
- 14:56, 13 September 2013 diff hist 0 830 - Haplotyper::SetupPrior() current
- 14:56, 13 September 2013 diff hist +324 N 830 - Haplotyper::SetupPrior() Created page with "<source code="cpp"> void Haplotyper::SetupPrior(float * matrix) { float prior = 1.0 / (states * states); for (int i = 0; i < states; i++) { for (int j = ..."
- 14:55, 13 September 2013 diff hist +77 Biostatistics 830 - Code Snippets →Code Snippets
- 14:52, 13 September 2013 diff hist +1,947 N 830 - Haplotyper::Transpose() Created page with "<source lang="cpp"> void Haplotyper::Transpose(float * source, float * dest, float theta) { // *source and *dest store a vector with likelihood information for each pos..." current
- 14:48, 13 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:48, 13 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Code Snippets
- 14:47, 13 September 2013 diff hist +91 830 - Haplotyper::RandomSetup()
- 14:46, 13 September 2013 diff hist +1,837 N 830 - Haplotyper::RandomSetup() Created page with "<source lang="cpp"> void Haplotyper::RandomSetup(Random * rand) { // access two arrays... // genotypes[i][j] includes genotypes for each individual // i..."
- 14:42, 13 September 2013 diff hist +37 Biostatistics 830 - Code Snippets →Code Snippets
- 14:38, 13 September 2013 diff hist +263 N Biostatistics 830 - Code Snippets Created page with "== Li et al (2010) Genet Epidemiol == === Full Citation === Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotyp..."
- 14:37, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 14:37, 13 September 2013 diff hist +22 Biostatistics 830: Main Page →Required Reading
- 10:50, 9 September 2013 diff hist -2 Abecasis Group Awards
- 10:50, 9 September 2013 diff hist +129 Abecasis Group Awards →Goncalo's Awards
- 15:10, 4 September 2013 diff hist -12 Biostatistics 830: Main Page →Required Reading
- 15:09, 4 September 2013 diff hist +175 Biostatistics 830: Main Page →Required Reading
- 15:08, 4 September 2013 diff hist +162 Biostatistics 830: Main Page →Required Reading
- 15:05, 4 September 2013 diff hist +51 Biostatistics 830: Main Page →Required Reading
- 10:32, 4 September 2013 diff hist -3 Biostatistics 830: Main Page →Required Reading
- 10:31, 4 September 2013 diff hist +26 Biostatistics 830: Main Page →Required Reading
- 10:30, 4 September 2013 diff hist +130 Biostatistics 830: Main Page →Required Reading
- 10:25, 4 September 2013 diff hist +2,526 Biostatistics 830: Main Page →Required Reading
- 09:27, 4 September 2013 diff hist +2,396 N Biostatistics 830: Core Competencies Created page with "The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its syllabus. This is the list of competencies cover..." current
- 09:24, 4 September 2013 diff hist -198 Biostatistics 666: Main Page
- 09:22, 4 September 2013 diff hist +2,344 N Biostatistics 830: Main Page Created page with "== Objective == Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies are changing rapidly with the availab..."
- 09:15, 4 September 2013 diff hist +42 N 830 Redirected page to Biostatistics 830: Main Page current
- 09:15, 4 September 2013 diff hist +42 N Biostatistics 830 Redirected page to Biostatistics 830: Main Page current
- 09:13, 4 September 2013 diff hist +39 MediaWiki:Sidebar
- 12:33, 12 August 2013 diff hist +27 Short Workshops →Low Pass Whole Genomes
- 12:32, 12 August 2013 diff hist +137 Short Workshops
- 01:51, 3 August 2013 diff hist +44 Goncalo Abecasis →2013 Overton Prize current
- 01:50, 3 August 2013 diff hist -2 Goncalo Abecasis
- 01:50, 3 August 2013 diff hist +66 Goncalo Abecasis →2013 Overton Prize
- 12:10, 2 August 2013 diff hist +100 Goncalo Abecasis →See Also
- 12:07, 2 August 2013 diff hist 0 N File:2013.07 - Overton Award Final.pdf current
- 10:17, 2 August 2013 diff hist +114 Abecasis Group Awards →American Society of Human Genetics
- 15:24, 12 June 2013 diff hist +37 Dajiang Liu →Rare Metal and Rare Metal Worker
- 15:23, 12 June 2013 diff hist +228 Dajiang Liu
- 15:21, 12 June 2013 diff hist +40 Scott Vrieze
- 15:20, 12 June 2013 diff hist 0 N File:Scott Vrieze.jpg current
- 12:14, 12 June 2013 diff hist +17 Dajiang Liu
- 03:30, 12 June 2013 diff hist +324 Exome Chip Design →Cautious Sites
- 11:42, 11 June 2013 diff hist +187 N Dajiang Liu Created page with 'Dajiang Liu is currently a research fellow working on rare variant analysis methods with Goncalo Abecasis. Previously, he completed his Ph.D. at Rice University working with Suza…'
- 11:41, 11 June 2013 diff hist +4 Abecasis Lab →Research Fellows
- 04:29, 10 June 2013 diff hist +12 Abecasis Lab →Staff
- 04:28, 10 June 2013 diff hist +13 Abecasis Lab →Graduate Students
- 14:56, 7 June 2013 diff hist +118 Goncalo Abecasis: Interview with Christiana Fogg current
- 12:24, 5 June 2013 diff hist +6 Abecasis Group Awards →Goncalo's Awards
- 12:22, 5 June 2013 diff hist -8 Abecasis Group Awards →Goncalo's Awards
- 12:21, 5 June 2013 diff hist +115 Abecasis Group Awards →Goncalo's Awards
- 18:28, 21 May 2013 diff hist -9 Trial Enrichment →Download current
- 18:27, 21 May 2013 diff hist +48 VerifyBamID →Interpreting output files
- 21:08, 15 May 2013 diff hist +874 Goncalo Abecasis
- 18:32, 15 May 2013 diff hist +18,913 N Goncalo Abecasis: Interview with Christiana Fogg Created page with 'In March 2013, I was awarded the Overton Prize by the International Society for Computational Biology (ISCB). I am not sure I deserve it and, perhaps to double check if they had …'
- 18:23, 15 May 2013 diff hist +70 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist +1 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist -2 Goncalo Abecasis
- 00:20, 13 May 2013 diff hist +6 TrioCaller →Introduction
- 00:19, 13 May 2013 diff hist +16 TrioCaller →Note: if you are interesting in detecting de novo mutations, or are working on a small number of families with high coverage data (e.g. exome sequencing), please first try our sister program Polymutt .
- 00:14, 13 May 2013 diff hist -34 TrioCaller →Introduction
- 10:08, 8 March 2013 diff hist +231 Nm User talk:Dajiang Liu Welcome! current
- 10:08, 8 March 2013 diff hist +1,163 Nm User:Dajiang Liu Creating user page with biography of new user. current
- 21:51, 7 March 2013 diff hist -83 Tutorial: RAREMETAL →STEP 1: Install Software and Download Example Data Sets
- 21:47, 7 March 2013 diff hist -319 Tutorial: RAREMETAL →Introduction
- 13:36, 5 March 2013 diff hist +3 Minimac: Tutorial →Getting Started
- 13:35, 5 March 2013 diff hist +1 Minimac: Tutorial →Getting Started
- 13:30, 5 March 2013 diff hist +10 Minimac: Tutorial →Getting Started
- 00:05, 4 March 2013 diff hist +15 Abecasis Lab →Research Fellows
- 15:32, 31 January 2013 diff hist +89 Minimac: Tutorial →Imputation into Phased Haplotypes - minimac
- 15:29, 31 January 2013 diff hist -88 Minimac: Tutorial →Imputation into Phased Haplotypes - minimac
- 09:10, 31 January 2013 diff hist +955 Minimac Diagnostics →Leave One Out Statistics
- 09:00, 31 January 2013 diff hist +6 Minimac
- 09:00, 31 January 2013 diff hist +446 Minimac
- 12:58, 10 January 2013 diff hist +35 Abecasis Lab →Graduate Students
- 12:57, 10 January 2013 diff hist +16 Abecasis Lab →Former Masters Students
- 12:57, 10 January 2013 diff hist -1 Abecasis Lab →Graduate Students
- 12:56, 10 January 2013 diff hist +133 Abecasis Lab →Former Doctoral Students
- 12:54, 10 January 2013 diff hist -12 Abecasis Lab →Graduate Students
- 15:53, 9 January 2013 diff hist +113 Code Sample: Generating QQ Plots in R
- 15:53, 9 January 2013 diff hist +114 Code Sample: Generating Manhattan Plots in R
- 15:20, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot-B.png current
- 15:20, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot-A.png current
- 15:19, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot.png current
- 15:17, 9 January 2013 diff hist +20,172 N Code Sample: Generating Manhattan Plots in R Created page with 'A useful way to summarize genome-wide association data is with a Manhattan plot. This type of plot has a point for every SNP or location tested with the position in the genome al…'
- 12:50, 9 January 2013 diff hist +9 Exome Chip Design →Second Generation Arrays
- 12:49, 9 January 2013 diff hist 0 Exome Chip Design →Second Generation Arrays
- 12:49, 9 January 2013 diff hist +2,085 Exome Chip Design →Illumina Exome Arrays
- 11:50, 22 December 2012 diff hist +154 Abecasis Lab →Former Research Fellows
- 11:48, 22 December 2012 diff hist -17 Abecasis Lab →Staff
- 11:48, 22 December 2012 diff hist +2 Abecasis Lab →International Visitors
- 11:47, 22 December 2012 diff hist +16 Abecasis Lab →Research Fellows
- 17:06, 21 December 2012 diff hist +235 Nm User talk:Chaolong Wang Welcome! current
- 17:06, 21 December 2012 diff hist +389 Nm User:Chaolong Wang Creating user page with biography of new user. current
- 15:34, 20 December 2012 diff hist -7 Biostatistics 666: Main Page
- 09:19, 5 December 2012 diff hist 0 File:666.24.pdf uploaded a new version of "File:666.24.pdf": →Minor tweaks current
- 06:56, 5 December 2012 diff hist -8 Biostatistics 666: Core Competencies current
- 10:58, 4 December 2012 diff hist +2,404 N Biostatistics 666: Core Competencies Created page with 'The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its subject syllabus. This is the list of competencies …'
- 10:45, 4 December 2012 diff hist +131 Biostatistics 666: Main Page →Objective
- 19:25, 3 December 2012 diff hist +67 Abecasis Lab →Former Doctoral Students
- 19:22, 3 December 2012 diff hist +44 Abecasis Lab →Former Research Fellows
- 19:20, 3 December 2012 diff hist 0 Abecasis Lab →Former Doctoral Students
- 19:18, 3 December 2012 diff hist 0 Abecasis Lab →Former Doctoral Students
- 19:16, 3 December 2012 diff hist +99 Abecasis Lab →Former Research Fellows
- 05:22, 3 December 2012 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf": This version adds a tiny bit more detail on the use of empirical kinship coefficients. current
- 04:47, 3 December 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes
- 04:46, 3 December 2012 diff hist +135 Biostatistics 666: Introduction to De Novo Assembly →Recommended Reading
- 04:44, 3 December 2012 diff hist +87 Biostatistics 666: Introduction to De Novo Assembly →Overview
- 04:43, 3 December 2012 diff hist 0 File:666.2012.01.pdf uploaded a new version of "File:666.2012.01.pdf": Added discussion of Lander Waterman results on contig lengths. current
- 14:58, 28 November 2012 diff hist 0 File:666.2011.01.pdf uploaded a new version of "File:666.2011.01.pdf": Typo fixes. current
- 09:28, 28 November 2012 diff hist 0 File:666.2011.01.pdf uploaded a new version of "File:666.2011.01.pdf": Minor updates (for consistency with new preceding lectures); added references for variable threshold test.
- 16:28, 27 November 2012 diff hist +116 Abecasis Group Awards →European Society of Human Genetics
- 09:40, 26 November 2012 diff hist +10 Biostatistics 666: Introduction to De Novo Assembly →Recommended Reading
- 09:39, 26 November 2012 diff hist +399 N Biostatistics 666: Introduction to De Novo Assembly Created page with '== Overview == Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery. == Slides == [[Media:666.…'