User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 17:23, 11 September 2021 diff hist +9 GotCloud →Getting Help with GotCloud current
- 17:22, 11 September 2021 diff hist +51 Samtools-hybrid current
- 17:21, 11 September 2021 diff hist -88 C++ Library: libStatGen →Copyrights current
- 17:20, 11 September 2021 diff hist -18 Software current
- 17:20, 11 September 2021 diff hist -18 SAM/BAM Classes FAQs current
- 17:19, 11 September 2021 diff hist +91 SAM/BAM Classes FAQs
- 17:19, 11 September 2021 diff hist +46 Software
- 17:14, 11 September 2021 diff hist -114 BamUtil current
- 08:03, 19 February 2019 diff hist -11 EPACTS →Output Files current
- 11:35, 8 June 2017 diff hist +9 Minimac Diagnostics →Estimated Imputation Accuracy current
- 15:24, 1 June 2017 diff hist +1 EPACTS →Single Variant Tests
- 07:50, 28 February 2017 diff hist -153 EPACTS →Currently Supported Statistical Tests
- 18:50, 15 December 2016 diff hist +19 EPACTS →Installation Details
- 18:48, 15 December 2016 diff hist +38 EPACTS →Getting Started With Examples
- 18:47, 15 December 2016 diff hist -27 EPACTS →Obtaining EPACTS
- 18:47, 15 December 2016 diff hist -175 EPACTS →Installation Details
- 18:45, 15 December 2016 diff hist +103 EPACTS →Single Variant Tests
- 18:44, 15 December 2016 diff hist +172 EPACTS →Lastest ChangeLog
- 13:22, 1 May 2016 diff hist -1 EPACTS →Single Variant Tests
- 13:21, 1 May 2016 diff hist +1 EPACTS →Single Variant Tests
- 18:32, 31 October 2015 diff hist -26 VerifyBamID →Acknowledgements
- 18:30, 31 October 2015 diff hist +16 VerifyBamID →Acknowledgements
- 11:26, 22 May 2015 diff hist -1 SeqShop: Calling Your Own Genome, May 2015 →Extracting only exonic SNPs
- 11:26, 22 May 2015 diff hist +58 SeqShop: Calling Your Own Genome, May 2015 →Extracting only exonic SNPs
- 11:23, 22 May 2015 diff hist +31 SeqShop: Calling Your Own Genome, May 2015 →Friday : More SNP Analysis
- 11:22, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 11:21, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Annotating your genome
- 11:21, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Extracting only exonic SNPs
- 11:20, 22 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 11:20, 22 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →Extracting only exonic SNPs
- 11:20, 22 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →Annotating your genome
- 11:04, 22 May 2015 diff hist +55 SeqShop: Calling Your Own Genome, May 2015 →Friday : More SNP Analysis
- 11:03, 22 May 2015 diff hist +63 SeqShop: Calling Your Own Genome, May 2015 →Friday : More SNP Analysis
- 10:53, 22 May 2015 diff hist +26 SeqShop: Calling Your Own Genome, May 2015 →Extracting only exonic SNPs
- 10:52, 22 May 2015 diff hist +19 SeqShop: Calling Your Own Genome, May 2015 →Annotating your genome
- 10:52, 22 May 2015 diff hist +20 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 10:50, 22 May 2015 diff hist +41 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 10:25, 22 May 2015 diff hist +19 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 10:24, 22 May 2015 diff hist -11 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 10:23, 22 May 2015 diff hist -11 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 09:35, 22 May 2015 diff hist -91 SeqShop: Calling Your Own Genome, May 2015 →Environmental Variables
- 09:26, 22 May 2015 diff hist +4 SeqShop: Calling Your Own Genome, May 2015 →Annotating your genome
- 09:25, 22 May 2015 diff hist +6 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP
- 09:25, 22 May 2015 diff hist +2 SeqShop: Calling Your Own Genome, May 2015 →Environmental Variables
- 09:23, 22 May 2015 diff hist +242 m SeqShop: Calling Your Own Genome, May 2015 Reverted edits by Hmkang (talk) to last revision by Mktrost
- 09:22, 22 May 2015 diff hist -8 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 09:20, 22 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015
- 09:18, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 09:17, 22 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 09:17, 22 May 2015 diff hist -13 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 09:17, 22 May 2015 diff hist -16 SeqShop: Calling Your Own Genome, May 2015 →Environmental Variables
- 09:15, 22 May 2015 diff hist -217 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 01:43, 20 May 2015 diff hist 0 N File:Seqshop 2015 day3 indel assembly.pdf current
- 01:43, 20 May 2015 diff hist +9 SeqShop: May 2015
- 01:42, 20 May 2015 diff hist +90 SeqShop: May 2015
- 00:30, 19 May 2015 diff hist 0 N File:May2015 Analysis of SV part 2.pdf current
- 00:29, 19 May 2015 diff hist 0 SeqShop: May 2015
- 22:31, 18 May 2015 diff hist 0 N File:Seqshop may 2015 day2 snp lecture v2.pdf current
- 22:30, 18 May 2015 diff hist +3 SeqShop: May 2015
- 10:58, 25 April 2015 diff hist +243 EPACTS →VCF file for Genotypes
- 16:14, 12 December 2014 diff hist -10 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:10, 12 December 2014 diff hist +12 SeqShop: Calling Your Own Genome, December 2014 →Extracting only exonic SNPs
- 14:56, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014
- 14:55, 12 December 2014 diff hist +9 SeqShop: Calling Your Own Genome, December 2014 →More SNP Analysis
- 14:54, 12 December 2014 diff hist +3,684 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 12:28, 10 December 2014 diff hist -98 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:27, 10 December 2014 diff hist +57 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:27, 10 December 2014 diff hist +13 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:26, 10 December 2014 diff hist +14 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:25, 10 December 2014 diff hist +128 SeqShop: Analysis of Structural Variation Practical, December 2014 →Command Line Usage of GenomeSTRiP pipeline
- 12:23, 10 December 2014 diff hist +3,444 SeqShop: Analysis of Structural Variation Practical, December 2014 →Overview of GotCloud/GenomeSTRiP pipeline
- 12:21, 10 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 12:21, 10 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:40, 10 December 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 10:37, 10 December 2014 diff hist -38 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 10:36, 10 December 2014 diff hist -5 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:33, 10 December 2014 diff hist +16 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:32, 10 December 2014 diff hist -4 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:31, 10 December 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:31, 10 December 2014 diff hist +154 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 10:23, 10 December 2014 diff hist -179 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 10:22, 10 December 2014 diff hist -5 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 10:16, 10 December 2014 diff hist +3 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 08:43, 10 December 2014 diff hist 0 N File:Dec2014 Analysis of SV part 2.pdf current
- 08:43, 10 December 2014 diff hist +30 SeqShop: December 2014
- 02:37, 10 December 2014 diff hist -16 SeqShop: Analysis of Structural Variation Practical, December 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 19:41, 9 December 2014 diff hist -26 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 19:39, 9 December 2014 diff hist -24 SeqShop: Analysis of Structural Variation Practical, December 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 16:46, 9 December 2014 diff hist -196 SeqShop: Analysis of Structural Variation Practical, December 2014 →GotCloud Configuration File
- 16:44, 9 December 2014 diff hist -33 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:42, 9 December 2014 diff hist -524 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:40, 9 December 2014 diff hist +18 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:38, 9 December 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:38, 9 December 2014 diff hist +1,141 SeqShop: Analysis of Structural Variation Practical, December 2014 →Reference Files
- 16:34, 9 December 2014 diff hist -25 SeqShop: Analysis of Structural Variation Practical, December 2014
- 22:11, 8 December 2014 diff hist +34 SeqShop: December 2014
- 22:10, 8 December 2014 diff hist 0 N File:Seqshop dec14 day2 snp lecture v2.pdf current
- 14:49, 27 August 2014 diff hist +1 EMMAX →= NaN in the kinship file
- 14:49, 27 August 2014 diff hist +220 EMMAX →Frequently asked Questions
- 08:15, 23 July 2014 diff hist 0 EMMAX →Effect allele
- 12:35, 11 July 2014 diff hist -6 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 12:31, 11 July 2014 diff hist -72 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
- 12:42, 10 July 2014 diff hist +89 EPACTS
- 12:41, 10 July 2014 diff hist +79 EPACTS
- 12:40, 10 July 2014 diff hist +79 EPACTS →Lastest ChangeLog
- 16:00, 19 June 2014 diff hist -1 SeqShop: Genetic Association Analysis Practical, June 2014 →Setup your run environment
- 15:31, 19 June 2014 diff hist +9 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:51, 19 June 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, June 2014 →Goals of This Session
- 12:51, 19 June 2014 diff hist +2 SeqShop: Genetic Association Analysis Practical, June 2014 →Goals of This Session
- 12:51, 19 June 2014 diff hist +117 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:50, 19 June 2014 diff hist 0 N File:Seqshop association practice 2014 06.pdf current
- 12:50, 19 June 2014 diff hist 0 File:Seqshop association 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop association 2014 06.pdf" current
- 12:47, 19 June 2014 diff hist 0 N File:Seqshop association 2014 06.pdf
- 12:45, 19 June 2014 diff hist -300 SeqShop: Genetic Association Analysis Practical, June 2014 →Phenotype Information
- 12:44, 19 June 2014 diff hist +43 SeqShop: Genetic Association Analysis Practical, June 2014 →Setup your run environment
- 12:43, 19 June 2014 diff hist +3,991 SeqShop: Genetic Association Analysis Practical, June 2014
- 12:34, 19 June 2014 diff hist 0 N File:Single.zoom.22.36995620.png current
- 12:33, 19 June 2014 diff hist 0 N File:Single.epacts.mh.png current
- 12:33, 19 June 2014 diff hist 0 N File:Single.epacts.qq.png
- 12:33, 19 June 2014 diff hist 0 N File:Emmax.epacts.qq.pdf current
- 12:23, 19 June 2014 diff hist +433 SeqShop: Genetic Association Analysis Practical, June 2014
- 02:51, 19 June 2014 diff hist +536 SeqShop: Genetic Association Analysis Practical, June 2014 →Annotating Variants with EPACTS
- 02:18, 19 June 2014 diff hist +1,777 SeqShop: Genetic Association Analysis Practical, June 2014 →Annotating Variants with EPACTS
- 02:08, 19 June 2014 diff hist +10,800 N SeqShop: Genetic Association Analysis Practical, June 2014 Created page with "(''WARNING: Under Construction'') == Goals of This Session == * Understand how to annotate variants using EPACTS * Understand how to run single variant association analysis u..."
- 00:02, 19 June 2014 diff hist 0 EPACTS
- 01:43, 18 June 2014 diff hist 0 File:Seqshop cnv partb 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf" current
- 01:39, 18 June 2014 diff hist 0 File:Seqshop cnv partb 2014 06.pdf Hmkang uploaded a new version of "File:Seqshop cnv partb 2014 06.pdf"
- 01:37, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:37, 18 June 2014 diff hist -2 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:36, 18 June 2014 diff hist +102 SeqShop: Analysis of Structural Variation Practical, June 2014 →Goals of This Session
- 01:35, 18 June 2014 diff hist 0 N File:Seqshop cnv partb 2014 06.pdf
- 01:29, 18 June 2014 diff hist -35 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:28, 18 June 2014 diff hist -2 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 01:22, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 01:22, 18 June 2014 diff hist +10 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 01:20, 18 June 2014 diff hist +134 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why use GenomeSTRiP?
- 01:18, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself?
- 01:17, 18 June 2014 diff hist -7 SeqShop: Analysis of Structural Variation Practical, June 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 01:17, 18 June 2014 diff hist +48 SeqShop: Analysis of Structural Variation Practical, June 2014 →Sequnce Alignment Files: BAM Files and Index Files
- 01:15, 18 June 2014 diff hist +147 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 01:13, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:12, 18 June 2014 diff hist -8,894 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:12, 18 June 2014 diff hist +1 SeqShop: Analysis of Structural Variation Practical, June 2014 →What does a real SV look like?
- 01:11, 18 June 2014 diff hist +1,988 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 01:08, 18 June 2014 diff hist 0 N File:Genomestrip thirdparty screenshot.png current
- 00:58, 18 June 2014 diff hist 0 N File:Genomestrip genotype screenshot.png current
- 00:55, 18 June 2014 diff hist 0 N File:Igvsvexample.png current
- 00:14, 18 June 2014 diff hist +699 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:13, 18 June 2014 diff hist 0 N File:Genomestrip filter description.png current
- 00:07, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:07, 18 June 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:06, 18 June 2014 diff hist +132 SeqShop: Analysis of Structural Variation Practical, June 2014 →How many variants are filtered out?
- 00:05, 18 June 2014 diff hist +713 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 00:03, 18 June 2014 diff hist -1 SeqShop: Analysis of Structural Variation Practical, June 2014 →Overview of GotCloud/GenomeSTRiP pipeline
- 00:02, 18 June 2014 diff hist +346 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment
- 23:56, 17 June 2014 diff hist +53 SeqShop: Analysis of Structural Variation Practical, June 2014 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 23:55, 17 June 2014 diff hist 0 N File:Genomestrip discovery screenshot.png current
- 23:53, 17 June 2014 diff hist +26 SeqShop: Analysis of Structural Variation Practical, June 2014 →Setup your run environment
- 23:52, 17 June 2014 diff hist +3,323 SeqShop: Analysis of Structural Variation Practical, June 2014 →Run GotCloud/GenomeSTRiP pipeline
- 23:14, 17 June 2014 diff hist -6 SeqShop: Analysis of Structural Variation Practical, June 2014 →Run GotCloud/GenomeSTRiP pipeline
- 15:10, 17 June 2014 diff hist +833 SeqShop: Analysis of Structural Variation Practical, June 2014
- 14:56, 17 June 2014 diff hist -185 SeqShop: Analysis of Structural Variation Practical, June 2014 →Reference Files
- 14:56, 17 June 2014 diff hist +990 SeqShop: Analysis of Structural Variation Practical, June 2014
- 14:47, 17 June 2014 diff hist +21 SeqShop: Analysis of Structural Variation Practical, June 2014 →Reference Files
- 14:46, 17 June 2014 diff hist +971 SeqShop: Analysis of Structural Variation Practical, June 2014
- 09:46, 17 June 2014 diff hist -54 SeqShop: Analysis of Structural Variation Practical, June 2014
- 09:43, 17 June 2014 diff hist -3 SeqShop: Analysis of Structural Variation Practical, June 2014 →Genotype Refinement Output
- 09:39, 17 June 2014 diff hist +1 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Header
- 09:37, 17 June 2014 diff hist 0 N File:Gotcloudmemotyexome.png current
- 09:36, 17 June 2014 diff hist 0 N File:Gotcloudruntimewgs.png current
- 09:22, 17 June 2014 diff hist +167 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Run GotCloud SnpCall
- 09:19, 17 June 2014 diff hist 0 N File:Gotcloudoverview.png current
- 02:31, 17 June 2014 diff hist -1 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 02:29, 17 June 2014 diff hist +32 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud indel Ouptut
- 02:28, 17 June 2014 diff hist +521 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 02:27, 17 June 2014 diff hist 0 N File:Samtoolsviewindel.png current
- 02:22, 17 June 2014 diff hist +135 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 02:21, 17 June 2014 diff hist +915 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 02:20, 17 June 2014 diff hist 0 N File:Samtoolstviewsnp.png current
- 01:42, 17 June 2014 diff hist +35 SeqShop: Analysis of Structural Variation Practical, June 2014
- 01:41, 17 June 2014 diff hist +13,984 N SeqShop: Analysis of Structural Variation Practical, June 2014 Created page with "==Introduction== See the introductory slides for an intro to this tutorial. == Goals of This Session == * What we want to learn is ca..."
- 01:14, 17 June 2014 diff hist -528 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Records
- 01:02, 17 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 01:01, 17 June 2014 diff hist +2 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Did I find interesting variants?
- 01:01, 17 June 2014 diff hist +1,874 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud indel Ouptut
- 00:50, 17 June 2014 diff hist 0 File:EvsAPOL1b.png Hmkang uploaded a new version of "File:EvsAPOL1b.png" current
- 00:43, 17 June 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Did I find interesting variants?
- 00:40, 17 June 2014 diff hist 0 N File:EvsAPOL1b.png
- 00:40, 17 June 2014 diff hist 0 N File:EvsAPOL1a.png current
- 00:14, 17 June 2014 diff hist +529 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
- 23:43, 16 June 2014 diff hist +75 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 23:42, 16 June 2014 diff hist +172 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 23:39, 16 June 2014 diff hist +258 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 23:36, 16 June 2014 diff hist 0 N File:Gotcloud align detail.png current
- 23:31, 16 June 2014 diff hist +9 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 23:31, 16 June 2014 diff hist +116 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 23:30, 16 June 2014 diff hist +7 Understanding vcf-summary output →Rows of vcf-summary output has three sections
- 23:29, 16 June 2014 diff hist -1 Understanding vcf-summary output →What should we expect from good SNP call sets?
- 23:29, 16 June 2014 diff hist +3,751 Understanding vcf-summary output
- 22:46, 16 June 2014 diff hist +1,284 N Understanding vcf-summary output Created page with "== What is vcf-summary? == <code>vcf-summary</code> is a utility included in GotCloud that helps evaluate the quality of SNP calls. Because GotCloud will automaticall..."
- 22:08, 16 June 2014 diff hist -10 Template:SeqShopLogin →Login to the seqshop-server Linux Machine
- 22:07, 16 June 2014 diff hist +143 Template:SeqShopLogin →Login to the seqshop-server Linux Machine
- 15:37, 16 June 2014 diff hist +25 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Setup your run environment
- 15:36, 16 June 2014 diff hist +91 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Setup your run environment
- 10:57, 11 March 2014 diff hist +91 EPACTS →Full ChangeLog
- 10:56, 11 March 2014 diff hist +8 EPACTS →Lastest ChangeLog
- 10:56, 11 March 2014 diff hist +83 EPACTS →Lastest ChangeLog
- 02:31, 7 January 2014 diff hist +98 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Lecture 8 current
- 02:26, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 02:25, 7 January 2014 diff hist -226 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 02:21, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 02:20, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 02:19, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Preparing Input Files
- 01:33, 7 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 01:33, 7 January 2014 diff hist +16 Tutorial: EMMAX GotCloud STOM: Lecture 8
- 01:14, 7 January 2014 diff hist -1 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Visualizing Zoom Plot =
- 20:04, 6 January 2014 diff hist 0 File:Stom practice 08.pdf Hmkang uploaded a new version of "File:Stom practice 08.pdf" current
- 20:00, 6 January 2014 diff hist +368 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 19:50, 6 January 2014 diff hist 0 File:Stom practice 06.pdf Hmkang uploaded a new version of "File:Stom practice 06.pdf" current
- 10:56, 6 January 2014 diff hist -11 Tutorial: EMMAX GotCloud STOM →Lecture 8 : Sequence-based association using EPACTS current
- 10:56, 6 January 2014 diff hist 0 N File:Stom practice 08.pdf
- 10:55, 6 January 2014 diff hist +2,295 N Tutorial: EMMAX GotCloud STOM: Lecture 8 Created page with "STOM 2014 Workshop - Practical Sessions 8 == Lecture 8 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 10:07, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files current
- 10:07, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files
- 09:58, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Preparing Input Files current
- 09:58, 6 January 2014 diff hist -14 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Running LD-aware genotype refinement
- 09:57, 6 January 2014 diff hist -15 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Run GotCloud SNP calling Pipeline
- 04:24, 6 January 2014 diff hist 0 Tutorial: EMMAX GotCloud STOM →Lecture 8 : Sequence-based association using EPACTS
- 04:23, 6 January 2014 diff hist +68 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:22, 6 January 2014 diff hist +64 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:22, 6 January 2014 diff hist +108 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:21, 6 January 2014 diff hist +58 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:20, 6 January 2014 diff hist +29 Tutorial: EMMAX GotCloud STOM →Lecture 6
- 04:19, 6 January 2014 diff hist 0 N File:Stom practice 06.pdf
- 04:18, 6 January 2014 diff hist 0 N File:Stom practice 05.pdf current
- 04:17, 6 January 2014 diff hist -3,643 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:10, 6 January 2014 diff hist +3,161 N Tutorial: EMMAX GotCloud STOM: Lecture 6 Created page with "STOM 2014 Workshop - Practical Sessions 6 == Lecture 6 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 04:02, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 5
- 03:31, 6 January 2014 diff hist -12 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Run GotCloud Alignment Pipeline
- 03:31, 6 January 2014 diff hist -7 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files
- 03:30, 6 January 2014 diff hist +2,089 N Tutorial: EMMAX GotCloud STOM: Lecture 5 Created page with "STOM 2014 Workshop - Practical Sessions 5 == Lecture 5 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 03:07, 6 January 2014 diff hist +3,906 N Tutorial: EMMAX GotCloud STOM: Lecture 2 Created page with "STOM 2014 Workshop - Practical Sessions 2 == Lecture 2 == The slides describing the notes below are available here (PDF) === Basic Setup ==..." current
- 01:14, 6 January 2014 diff hist -13 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 01:14, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 01:13, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 21:15, 5 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM →Genomic Control
- 15:44, 5 January 2014 diff hist 0 File:Stom practice 02.pdf Hmkang uploaded a new version of "File:Stom practice 02.pdf" current
- 15:43, 5 January 2014 diff hist -21 Tutorial: EMMAX GotCloud STOM →Mixed Model Association
- 15:42, 5 January 2014 diff hist +96 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:41, 5 January 2014 diff hist 0 N File:Stom practice 02.pdf
- 15:40, 5 January 2014 diff hist +2,472 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:32, 5 January 2014 diff hist -4 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:32, 5 January 2014 diff hist +1,382 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 15:26, 5 January 2014 diff hist +800 Tutorial: EMMAX GotCloud STOM
- 08:48, 5 January 2014 diff hist +3 N Tutorial: EMMAX GotCloud STOM Created page with "TBA"
- 08:48, 5 January 2014 diff hist +142 Short Workshops
- 15:48, 26 November 2013 diff hist +6 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +1 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +1 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +443 QPLOT →Introduction
- 10:29, 26 November 2013 diff hist -374 Biostatistics 602: Main Page →Exams & Important Dates current
- 10:28, 26 November 2013 diff hist -914 Biostatistics 602: Main Page →Problem Sets
- 14:55, 21 November 2013 diff hist +236 EPACTS →Full ChangeLog
- 14:51, 21 November 2013 diff hist +120 EPACTS →Full ChangeLog
- 14:50, 21 November 2013 diff hist +120 EPACTS →Lastest ChangeLog
- 14:49, 21 November 2013 diff hist 0 EPACTS →Installation Details
- 12:22, 20 November 2013 diff hist +48 VcfCooker
- 12:49, 11 September 2013 diff hist +1 EPACTS →Detailed Options
- 12:36, 11 September 2013 diff hist +264 EPACTS →Output Files
- 15:52, 10 September 2013 diff hist -2 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites current
- 15:44, 10 September 2013 diff hist -1 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:41, 10 September 2013 diff hist +21 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:41, 10 September 2013 diff hist +950 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:37, 10 September 2013 diff hist +35 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:36, 10 September 2013 diff hist +1,997 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:33, 10 September 2013 diff hist +4,294 N PileupBasedVariantCalling Created page with "== Overview == This page describes the procedure for pileup-based variant calling. The software package is currently in-house at Center for Statistical Genetics (CSG) at Univ..."
- 10:15, 9 August 2013 diff hist +6 UMAKE
- 10:14, 9 August 2013 diff hist +189 UMAKE
- 16:15, 6 August 2013 diff hist -11 Tutorial: GotCloud UW CMG →STEP 5 : All-in-one running of all scripts (for later use) current
- 16:12, 6 August 2013 diff hist +14,836 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 16:04, 6 August 2013 diff hist +8,870 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 15:49, 6 August 2013 diff hist +105 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 13:39, 6 August 2013 diff hist +83 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 12:59, 6 August 2013 diff hist +737 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 12:46, 6 August 2013 diff hist +1,442 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:39, 6 August 2013 diff hist -66 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:37, 6 August 2013 diff hist +6,524 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:21, 6 August 2013 diff hist +4,793 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:17, 6 August 2013 diff hist -2 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 12:16, 6 August 2013 diff hist +913 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 12:09, 6 August 2013 diff hist -22 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 12:09, 6 August 2013 diff hist +4,607 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 11:42, 6 August 2013 diff hist +1 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 10:30, 6 August 2013 diff hist 0 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 05:29, 6 August 2013 diff hist +210 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 05:27, 6 August 2013 diff hist -60 Tutorial: GotCloud UW CMG
- 05:26, 6 August 2013 diff hist -28 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 05:26, 6 August 2013 diff hist +4,659 N Tutorial: GotCloud UW CMG Created page with '= GotCloud / EPACTS Tutorial = In this tutorial, we illustrate some of the essential steps in the analysis of next generation sequence data. For a background on GotCloud and Se…'
- 11:56, 14 May 2013 diff hist +1 EMMAX →IBS matrix or BN matrix?
- 11:47, 14 May 2013 diff hist +712 EMMAX →Frequently asked Questions
- 22:40, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-handout.pdf uploaded a new version of "File:Bios602-wi13-lec26-handout.pdf" current
- 22:39, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec26-presentation.pdf" current
- 14:06, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec26-presentation.pdf"
- 14:05, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-handout.pdf uploaded a new version of "File:Bios602-wi13-lec26-handout.pdf"
- 04:24, 24 April 2013 diff hist 0 Biostatistics 602: Main Page →Class Notes
- 04:23, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-handout.pdf uploaded a new version of "File:Bios602-wi13-lec26-handout.pdf"
- 04:23, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec26-presentation.pdf"
- 04:23, 24 April 2013 diff hist 0 File:Bios602-wi13-lec26-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec26-presentation.pdf"
- 00:37, 21 April 2013 diff hist 0 File:Bios602-wi13-lec25-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec25-presentation.pdf" current
- 00:37, 21 April 2013 diff hist 0 File:Bios602-wi13-lec25-handout.pdf uploaded a new version of "File:Bios602-wi13-lec25-handout.pdf" current
- 00:25, 21 April 2013 diff hist 0 N File:Bios602-wi13-lec26-presentation.pdf
- 00:25, 21 April 2013 diff hist 0 N File:Bios602-wi13-lec26-handout.pdf
- 00:25, 21 April 2013 diff hist -10 Biostatistics 602: Main Page →Class Notes
- 00:24, 21 April 2013 diff hist -7 Biostatistics 602: Main Page →Class Notes
- 00:24, 21 April 2013 diff hist +188 Biostatistics 602: Main Page →Class Notes
- 00:23, 21 April 2013 diff hist +63 Biostatistics 602: Main Page →Problem Sets
- 08:43, 18 April 2013 diff hist 0 File:Bios602-wi13-lec25-handout.pdf uploaded a new version of "File:Bios602-wi13-lec25-handout.pdf"
- 08:30, 18 April 2013 diff hist 0 File:Bios602-wi13-lec25-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec25-presentation.pdf"
- 01:08, 18 April 2013 diff hist 0 N File:Bios602-wi13-lec25-presentation.pdf
- 01:08, 18 April 2013 diff hist 0 N File:Bios602-wi13-lec25-handout.pdf
- 01:07, 18 April 2013 diff hist +188 Biostatistics 602: Main Page →Class Notes
- 23:14, 16 April 2013 diff hist 0 File:Rcrs-chapter-02.pdf uploaded a new version of "File:Rcrs-chapter-02.pdf" current
- 23:02, 16 April 2013 diff hist 0 N File:Rcrs-chapter-02.pdf
- 17:24, 14 April 2013 diff hist +156 Biostatistics 602: Main Page →Exams & Important Dates
- 17:23, 14 April 2013 diff hist 0 File:Bios602-wi13-lec20-handout.pdf uploaded a new version of "File:Bios602-wi13-lec20-handout.pdf" current
- 17:23, 14 April 2013 diff hist 0 File:Bios602-wi13-lec20-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec20-presentation.pdf" current
- 17:22, 14 April 2013 diff hist 0 File:Bios602-wi13-lec22-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec22-presentation.pdf" current
- 17:22, 14 April 2013 diff hist 0 File:Bios602-wi13-lec22-handout.pdf uploaded a new version of "File:Bios602-wi13-lec22-handout.pdf" current
- 17:22, 14 April 2013 diff hist 0 File:Bios602-wi13-lec23-handout.pdf uploaded a new version of "File:Bios602-wi13-lec23-handout.pdf" current
- 17:22, 14 April 2013 diff hist 0 File:Bios602-wi13-lec23-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec23-presentation.pdf" current
- 17:21, 14 April 2013 diff hist 0 N File:Bios602-wi13-lec24-presentation.pdf current
- 17:21, 14 April 2013 diff hist 0 N File:Bios602-wi13-lec24-handout.pdf current
- 17:20, 14 April 2013 diff hist +178 Biostatistics 602: Main Page →Class Notes
- 12:04, 11 April 2013 diff hist +1 EPACTS →Single Variant Tests
- 12:00, 11 April 2013 diff hist 0 Biostatistics 602: Main Page →Class Notes
- 12:00, 11 April 2013 diff hist 0 File:Bios602-wi13-lec23-handout.pdf uploaded a new version of "File:Bios602-wi13-lec23-handout.pdf"
- 12:00, 11 April 2013 diff hist 0 File:Bios602-wi13-lec23-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec23-presentation.pdf"
- 14:41, 10 April 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 14:41, 10 April 2013 diff hist +184 Biostatistics 602: Main Page →Class Notes
- 14:40, 10 April 2013 diff hist 0 N File:Bios602-wi13-lec23-presentation.pdf
- 14:40, 10 April 2013 diff hist 0 N File:Bios602-wi13-lec23-handout.pdf
- 14:39, 10 April 2013 diff hist 0 File:Bios602-wi13-lec22-handout.pdf uploaded a new version of "File:Bios602-wi13-lec22-handout.pdf"
- 14:39, 10 April 2013 diff hist 0 File:Bios602-wi13-lec22-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec22-presentation.pdf"
- 14:39, 10 April 2013 diff hist 0 File:Bios602-wi13-lec21-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec21-presentation.pdf" current
- 14:39, 10 April 2013 diff hist 0 File:Bios602-wi13-lec21-handout.pdf uploaded a new version of "File:Bios602-wi13-lec21-handout.pdf" current
- 14:39, 10 April 2013 diff hist 0 File:Bios602-wi13-lec20-handout.pdf uploaded a new version of "File:Bios602-wi13-lec20-handout.pdf"
- 14:38, 10 April 2013 diff hist 0 File:Bios602-wi13-lec20-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec20-presentation.pdf"
- 14:38, 10 April 2013 diff hist 0 File:Bios602-wi13-lec19-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec19-presentation.pdf" current
- 14:38, 10 April 2013 diff hist 0 File:Bios602-wi13-lec19-handout.pdf uploaded a new version of "File:Bios602-wi13-lec19-handout.pdf" current
- 14:38, 10 April 2013 diff hist 0 File:Bios602-wi13-lec18-handout.pdf uploaded a new version of "File:Bios602-wi13-lec18-handout.pdf" current
- 14:37, 10 April 2013 diff hist 0 File:Bios602-wi13-lec18-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec18-presentation.pdf" current
- 08:49, 8 April 2013 diff hist 0 Biostatistics 602: Main Page →Class Notes
- 08:49, 8 April 2013 diff hist +22 Biostatistics 602: Main Page →Problem Sets
- 08:48, 8 April 2013 diff hist 0 N File:Bios602-wi13-lec22-presentation.pdf
- 08:48, 8 April 2013 diff hist 0 N File:Bios602-wi13-lec22-handout.pdf
- 08:48, 8 April 2013 diff hist +173 Biostatistics 602: Main Page →Class Notes
- 08:47, 8 April 2013 diff hist +127 Biostatistics 602: Main Page →Problem Sets
- 11:35, 2 April 2013 diff hist 0 File:Bios602-wi13-lec21-handout.pdf uploaded a new version of "File:Bios602-wi13-lec21-handout.pdf"
- 11:35, 2 April 2013 diff hist 0 File:Bios602-wi13-lec21-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec21-presentation.pdf"
- 16:05, 1 April 2013 diff hist 0 N File:Bios602-wi13-lec21-presentation.pdf
- 16:05, 1 April 2013 diff hist 0 N File:Bios602-wi13-lec21-handout.pdf
- 16:03, 1 April 2013 diff hist +196 Biostatistics 602: Main Page →Class Notes
- 04:33, 28 March 2013 diff hist 0 File:Bios602-wi13-lec20-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec20-presentation.pdf"
- 04:32, 28 March 2013 diff hist 0 File:Bios602-wi13-lec20-handout.pdf uploaded a new version of "File:Bios602-wi13-lec20-handout.pdf"
- 04:16, 28 March 2013 diff hist 0 N File:Bios602-wi13-lec20-presentation.pdf
- 04:16, 28 March 2013 diff hist 0 N File:Bios602-wi13-lec20-handout.pdf
- 04:15, 28 March 2013 diff hist +194 Biostatistics 602: Main Page →Class Notes
- 10:53, 26 March 2013 diff hist +1 EMMAX →Preparing Input Phenotype Files
- 22:54, 25 March 2013 diff hist +794 EPACTS
- 21:08, 25 March 2013 diff hist 0 N File:Bios602-wi13-lec19-presentation.pdf
- 21:08, 25 March 2013 diff hist 0 N File:Bios602-wi13-lec19-handout.pdf
- 21:07, 25 March 2013 diff hist +187 Biostatistics 602: Main Page →Class Notes
- 06:40, 22 March 2013 diff hist +13 Trial Enrichment →License
- 06:40, 22 March 2013 diff hist -13 Trial Enrichment →License
- 06:39, 22 March 2013 diff hist +1 Trial Enrichment →License
- 06:24, 22 March 2013 diff hist +24 Trial Enrichment →Modifying the software
- 06:23, 22 March 2013 diff hist +162 Trial Enrichment →Requirement
- 06:22, 22 March 2013 diff hist +1,737 Trial Enrichment →Prevention Trial Enrichment Using Genetic Information
- 06:19, 22 March 2013 diff hist 0 N File:TrialEnrichment.v1.tar.gz current
- 11:31, 21 March 2013 diff hist 0 File:Bios602-wi13-lec18-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec18-presentation.pdf"
- 23:14, 20 March 2013 diff hist 0 N File:Bios602-wi13-lec18-presentation.pdf
- 23:13, 20 March 2013 diff hist 0 N File:Bios602-wi13-lec18-handout.pdf
- 23:13, 20 March 2013 diff hist +183 Biostatistics 602: Main Page →Class Notes
- 23:12, 20 March 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 01:07, 18 March 2013 diff hist 0 File:Bios602-wi13-lec16-handout.pdf uploaded a new version of "File:Bios602-wi13-lec16-handout.pdf" current
- 01:07, 18 March 2013 diff hist 0 File:Bios602-wi13-lec16-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec16-presentation.pdf" current
- 01:07, 18 March 2013 diff hist 0 N File:Bios602-wi13-lec17-presentation.pdf current
- 01:06, 18 March 2013 diff hist 0 N File:Bios602-wi13-lec17-handout.pdf current
- 01:06, 18 March 2013 diff hist +149 Biostatistics 602: Main Page →Problem Sets
- 01:05, 18 March 2013 diff hist +200 Biostatistics 602: Main Page →Class Notes
- 15:25, 14 March 2013 diff hist +46 Trial Enrichment →Prevention Trial Enrichment Using Genetic Information
- 18:28, 13 March 2013 diff hist +172 Biostatistics 602: Main Page →Class Notes
- 18:27, 13 March 2013 diff hist 0 N File:Bios602-wi13-lec16-handout.pdf
- 18:27, 13 March 2013 diff hist 0 N File:Bios602-wi13-lec16-presentation.pdf
- 18:27, 13 March 2013 diff hist 0 File:Bios602-wi13-lec15-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec15-presentation.pdf" current
- 18:27, 13 March 2013 diff hist 0 File:Bios602-wi13-lec15-handout.pdf uploaded a new version of "File:Bios602-wi13-lec15-handout.pdf" current
- 18:14, 13 March 2013 diff hist 0 EPACTS →Installation Details
- 18:14, 13 March 2013 diff hist +122 EPACTS →Full ChangeLog
- 01:13, 11 March 2013 diff hist 0 N File:Bios602-wi13-lec15-presentation.pdf
- 01:13, 11 March 2013 diff hist 0 N File:Bios602-wi13-lec15-handout.pdf
- 01:12, 11 March 2013 diff hist -17 Biostatistics 602: Main Page →Class Notes
- 01:12, 11 March 2013 diff hist +200 Biostatistics 602: Main Page →Class Notes
- 10:57, 8 March 2013 diff hist +132 EPACTS →Obtaining EPACTS
- 10:56, 8 March 2013 diff hist +5 EPACTS →Output Files
- 10:56, 8 March 2013 diff hist +259 EPACTS →Output Files
- 10:50, 8 March 2013 diff hist +1 EPACTS →Running Groupwise Test
- 10:49, 8 March 2013 diff hist -2 EPACTS →Input Files
- 10:48, 8 March 2013 diff hist -2 EPACTS →More questions
- 10:47, 8 March 2013 diff hist 0 EPACTS →Input Files
- 10:34, 8 March 2013 diff hist 0 EPACTS →Installation Details
- 10:20, 8 March 2013 diff hist +291 EPACTS →Gene-wise or group-wise tests
- 10:17, 8 March 2013 diff hist -21 EPACTS →Lastest ChangeLog
- 10:17, 8 March 2013 diff hist +272 EPACTS →Full ChangeLog
- 15:03, 7 March 2013 diff hist +62 EPACTS →Gene-wise or group-wise tests
- 12:29, 7 March 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 22:35, 5 March 2013 diff hist +105 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS)
- 22:34, 5 March 2013 diff hist +105 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS)
- 22:25, 5 March 2013 diff hist +7 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline (EPACTS)
- 17:00, 4 March 2013 diff hist +326 Tutorial: GotCloud →Tutorial Inputs
- 16:55, 4 March 2013 diff hist +134 Tutorial: GotCloud →Frequently Asked Questions (FAQs)
- 16:54, 4 March 2013 diff hist +1 Tutorial: GotCloud →Frequently Asked Questions (FAQs)
- 16:53, 4 March 2013 diff hist +620 Tutorial: GotCloud
- 16:48, 4 March 2013 diff hist +9 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:48, 4 March 2013 diff hist -7 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:48, 4 March 2013 diff hist -1 Understanding VerifyBamID output →Expected Output from verifyBamID current
- 16:47, 4 March 2013 diff hist +4 Understanding VerifyBamID output →Expected Output from verifyBamID
- 16:47, 4 March 2013 diff hist +8 Understanding VerifyBamID output →Expected Output from verifyBamID
- 16:46, 4 March 2013 diff hist +651 Understanding VerifyBamID output
- 16:36, 4 March 2013 diff hist 0 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:36, 4 March 2013 diff hist -1 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:35, 4 March 2013 diff hist +104 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:35, 4 March 2013 diff hist 0 N File:EPACTS TEST.zoom.20.42987877.pdf current
- 16:32, 4 March 2013 diff hist +48 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:32, 4 March 2013 diff hist +8 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 16:32, 4 March 2013 diff hist +292 Tutorial: GotCloud →STEP 6 : Run GotCloud Association Analysis Pipeline
- 12:54, 1 March 2013 diff hist 0 Biostatistics 602: Main Page →Grading
- 03:59, 1 March 2013 diff hist -54 EPACTS →Installation Details
- 03:22, 1 March 2013 diff hist 0 Biostatistics 602: Main Page →Class Notes
- 03:22, 1 March 2013 diff hist 0 File:Bios602-wi13-lec14-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec14-presentation.pdf" current
- 03:22, 1 March 2013 diff hist 0 File:Bios602-wi13-lec14-handout.pdf uploaded a new version of "File:Bios602-wi13-lec14-handout.pdf" current
- 03:21, 1 March 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 03:20, 1 March 2013 diff hist +63 Biostatistics 602: Main Page →Problem Sets
- 12:36, 28 February 2013 diff hist +15 EMMAX →Citing EMMAX
- 12:36, 28 February 2013 diff hist +12 EMMAX →Citing EMMAX
- 12:36, 28 February 2013 diff hist +1 EMMAX →Citing EMMAX
- 12:36, 28 February 2013 diff hist -10 EMMAX →Citing EMMAX
- 12:35, 28 February 2013 diff hist +346 EMMAX →Frequently asked Questions
- 12:33, 28 February 2013 diff hist +2 EMMAX →Frequently asked Questions
- 12:29, 28 February 2013 diff hist -115 EPACTS →Gene-wise or group-wise tests
- 09:49, 28 February 2013 diff hist +53 EPACTS
- 09:47, 28 February 2013 diff hist +2,818 EPACTS
- 09:45, 28 February 2013 diff hist -2,430 EPACTS →ChangeLog
- 09:45, 28 February 2013 diff hist +488 EPACTS →ChangeLog
- 08:49, 28 February 2013 diff hist 0 Biostatistics 602: Main Page →Class Notes
- 08:48, 28 February 2013 diff hist 0 File:Bios602-wi13-lec13-handout.pdf uploaded a new version of "File:Bios602-wi13-lec13-handout.pdf" current
- 08:48, 28 February 2013 diff hist 0 File:Bios602-wi13-lec13-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec13-presentation.pdf" current
- 08:40, 28 February 2013 diff hist 0 File:Bios602-wi13-lec14-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec14-presentation.pdf"
- 01:38, 28 February 2013 diff hist 0 N File:Bios602-wi13-lec14-presentation.pdf
- 01:38, 28 February 2013 diff hist 0 N File:Bios602-wi13-lec14-handout.pdf
- 01:37, 28 February 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 01:36, 28 February 2013 diff hist +86 Biostatistics 602: Main Page →Problem Sets
- 01:36, 28 February 2013 diff hist +200 Biostatistics 602: Main Page →Class Notes
- 17:43, 25 February 2013 diff hist 0 File:Bios602-wi13-lec12-handout.pdf uploaded a new version of "File:Bios602-wi13-lec12-handout.pdf" current
- 17:43, 25 February 2013 diff hist 0 File:Bios602-wi13-lec12-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec12-presentation.pdf" current
- 17:42, 25 February 2013 diff hist 0 N File:Bios602-wi13-lec13-presentation.pdf
- 17:42, 25 February 2013 diff hist 0 N File:Bios602-wi13-lec13-handout.pdf
- 17:40, 25 February 2013 diff hist +186 Biostatistics 602: Main Page →Class Notes
- 12:25, 25 February 2013 diff hist -2 Tutorial: GotCloud →STEP 5 : Run GotCloud Association Analysis Pipeline
- 12:18, 25 February 2013 diff hist +6 Tutorial: GotCloud →Download the whole genome resource files
- 12:18, 25 February 2013 diff hist +162 Tutorial: GotCloud →Tutorial Inputs / Modifying the Tutorial Inputs to Run Your Own Data
- 12:04, 25 February 2013 diff hist +32 Tutorial: GotCloud →STEP 2 : Run GotCloud Alignment Pipeline
- 15:10, 21 February 2013 diff hist +12 Biostatistics 602: Main Page →Exams & Important Dates
- 15:09, 21 February 2013 diff hist +12 Biostatistics 602: Main Page →Exams & Important Dates
- 15:09, 21 February 2013 diff hist +126 Biostatistics 602: Main Page →Exams & Important Dates
- 12:21, 21 February 2013 diff hist +5 Tutorial: GotCloud
- 12:19, 21 February 2013 diff hist +2 Tutorial: GotCloud
- 12:18, 21 February 2013 diff hist +59 Tutorial: GotCloud →STEP 3 : Run GotCloud Variance Calling Pipeline
- 12:18, 21 February 2013 diff hist +25 Tutorial: GotCloud →Generating Variant Calls
- 12:17, 21 February 2013 diff hist +29 Tutorial: GotCloud →Mapping Reads
- 12:11, 21 February 2013 diff hist 0 Tutorial: GotCloud →STEP 1 : Install GotGloud
- 12:11, 21 February 2013 diff hist +7 Tutorial: GotCloud →Required Software
- 00:30, 17 February 2013 diff hist 0 File:Bios602-wi13-lec11-handout.pdf uploaded a new version of "File:Bios602-wi13-lec11-handout.pdf" current
- 00:30, 17 February 2013 diff hist 0 File:Bios602-wi13-lec11-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec11-presentation.pdf" current
- 00:29, 17 February 2013 diff hist 0 N File:Bios602-wi13-lec12-presentation.pdf
- 00:29, 17 February 2013 diff hist 0 N File:Bios602-wi13-lec12-handout.pdf
- 00:29, 17 February 2013 diff hist +186 Biostatistics 602: Main Page →Class Notes
- 10:16, 15 February 2013 diff hist 0 Biostatistics 602: Main Page →Problem Sets
- 10:16, 15 February 2013 diff hist +63 Biostatistics 602: Main Page →Problem Sets
- 16:13, 14 February 2013 diff hist +2 EPACTS
- 12:51, 14 February 2013 diff hist 0 File:Bios602-wi13-lec11-handout.pdf uploaded a new version of "File:Bios602-wi13-lec11-handout.pdf"
- 12:51, 14 February 2013 diff hist 0 File:Bios602-wi13-lec11-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec11-presentation.pdf"
- 18:27, 13 February 2013 diff hist -72 Biostatistics 602: Main Page →Problem Sets
- 18:26, 13 February 2013 diff hist 0 File:Bios602-wi13-lec09-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec09-presentation.pdf" current
- 18:26, 13 February 2013 diff hist 0 File:Bios602-wi13-lec09-handout.pdf uploaded a new version of "File:Bios602-wi13-lec09-handout.pdf" current
- 18:25, 13 February 2013 diff hist 0 File:Bios602-wi13-lec10-handout.pdf uploaded a new version of "File:Bios602-wi13-lec10-handout.pdf" current
- 18:25, 13 February 2013 diff hist 0 File:Bios602-wi13-lec10-presentation.pdf uploaded a new version of "File:Bios602-wi13-lec10-presentation.pdf" current
- 18:25, 13 February 2013 diff hist 0 N File:Bios602-wi13-lec11-presentation.pdf
- 18:24, 13 February 2013 diff hist 0 N File:Bios602-wi13-lec11-handout.pdf
- 18:24, 13 February 2013 diff hist +69 Biostatistics 602: Main Page →Exams & Important Dates
- 18:23, 13 February 2013 diff hist +110 Biostatistics 602: Main Page →Problem Sets