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Jump to navigationJump to search- 22:08, 16 June 2014 diff hist -10 Template:SeqShopLogin →Login to the seqshop-server Linux Machine
- 22:07, 16 June 2014 diff hist +143 Template:SeqShopLogin →Login to the seqshop-server Linux Machine
- 15:37, 16 June 2014 diff hist +25 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Setup your run environment
- 15:36, 16 June 2014 diff hist +91 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Setup your run environment
- 10:57, 11 March 2014 diff hist +91 EPACTS →Full ChangeLog
- 10:56, 11 March 2014 diff hist +8 EPACTS →Lastest ChangeLog
- 10:56, 11 March 2014 diff hist +83 EPACTS →Lastest ChangeLog
- 02:31, 7 January 2014 diff hist +98 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Lecture 8 current
- 02:26, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 02:25, 7 January 2014 diff hist -226 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 02:21, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 02:20, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 02:19, 7 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Preparing Input Files
- 01:33, 7 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Groupwise Test
- 01:33, 7 January 2014 diff hist +16 Tutorial: EMMAX GotCloud STOM: Lecture 8
- 01:14, 7 January 2014 diff hist -1 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Visualizing Zoom Plot =
- 20:04, 6 January 2014 diff hist 0 File:Stom practice 08.pdf Hmkang uploaded a new version of "File:Stom practice 08.pdf" current
- 20:00, 6 January 2014 diff hist +368 Tutorial: EMMAX GotCloud STOM: Lecture 8 →Run Single Variant Analysis
- 19:50, 6 January 2014 diff hist 0 File:Stom practice 06.pdf Hmkang uploaded a new version of "File:Stom practice 06.pdf" current
- 10:56, 6 January 2014 diff hist -11 Tutorial: EMMAX GotCloud STOM →Lecture 8 : Sequence-based association using EPACTS current
- 10:56, 6 January 2014 diff hist 0 N File:Stom practice 08.pdf
- 10:55, 6 January 2014 diff hist +2,295 N Tutorial: EMMAX GotCloud STOM: Lecture 8 Created page with "STOM 2014 Workshop - Practical Sessions 8 == Lecture 8 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 10:07, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files current
- 10:07, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files
- 09:58, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Preparing Input Files current
- 09:58, 6 January 2014 diff hist -14 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Running LD-aware genotype refinement
- 09:57, 6 January 2014 diff hist -15 Tutorial: EMMAX GotCloud STOM: Lecture 6 →Run GotCloud SNP calling Pipeline
- 04:24, 6 January 2014 diff hist 0 Tutorial: EMMAX GotCloud STOM →Lecture 8 : Sequence-based association using EPACTS
- 04:23, 6 January 2014 diff hist +68 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:22, 6 January 2014 diff hist +64 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:22, 6 January 2014 diff hist +108 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:21, 6 January 2014 diff hist +58 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:20, 6 January 2014 diff hist +29 Tutorial: EMMAX GotCloud STOM →Lecture 6
- 04:19, 6 January 2014 diff hist 0 N File:Stom practice 06.pdf
- 04:18, 6 January 2014 diff hist 0 N File:Stom practice 05.pdf current
- 04:17, 6 January 2014 diff hist -3,643 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 04:10, 6 January 2014 diff hist +3,161 N Tutorial: EMMAX GotCloud STOM: Lecture 6 Created page with "STOM 2014 Workshop - Practical Sessions 6 == Lecture 6 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 04:02, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM: Lecture 5
- 03:31, 6 January 2014 diff hist -12 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Run GotCloud Alignment Pipeline
- 03:31, 6 January 2014 diff hist -7 Tutorial: EMMAX GotCloud STOM: Lecture 5 →Preparing Input Files
- 03:30, 6 January 2014 diff hist +2,089 N Tutorial: EMMAX GotCloud STOM: Lecture 5 Created page with "STOM 2014 Workshop - Practical Sessions 5 == Lecture 5 == The slides describing the notes below are available here (PDF) === Basic Setup ==..."
- 03:07, 6 January 2014 diff hist +3,906 N Tutorial: EMMAX GotCloud STOM: Lecture 2 Created page with "STOM 2014 Workshop - Practical Sessions 2 == Lecture 2 == The slides describing the notes below are available here (PDF) === Basic Setup ==..." current
- 01:14, 6 January 2014 diff hist -13 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 01:14, 6 January 2014 diff hist -2 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 01:13, 6 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 21:15, 5 January 2014 diff hist +1 Tutorial: EMMAX GotCloud STOM →Genomic Control
- 15:44, 5 January 2014 diff hist 0 File:Stom practice 02.pdf Hmkang uploaded a new version of "File:Stom practice 02.pdf" current
- 15:43, 5 January 2014 diff hist -21 Tutorial: EMMAX GotCloud STOM →Mixed Model Association
- 15:42, 5 January 2014 diff hist +96 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:41, 5 January 2014 diff hist 0 N File:Stom practice 02.pdf
- 15:40, 5 January 2014 diff hist +2,472 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:32, 5 January 2014 diff hist -4 Tutorial: EMMAX GotCloud STOM →Lecture 2
- 15:32, 5 January 2014 diff hist +1,382 Tutorial: EMMAX GotCloud STOM →STOM 2014 Workshop - Practical Sessions
- 15:26, 5 January 2014 diff hist +800 Tutorial: EMMAX GotCloud STOM
- 08:48, 5 January 2014 diff hist +3 N Tutorial: EMMAX GotCloud STOM Created page with "TBA"
- 08:48, 5 January 2014 diff hist +142 Short Workshops
- 15:48, 26 November 2013 diff hist +6 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +1 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +1 QPLOT →Citing QPLOT
- 15:48, 26 November 2013 diff hist +443 QPLOT →Introduction
- 10:29, 26 November 2013 diff hist -374 Biostatistics 602: Main Page →Exams & Important Dates current
- 10:28, 26 November 2013 diff hist -914 Biostatistics 602: Main Page →Problem Sets
- 14:55, 21 November 2013 diff hist +236 EPACTS →Full ChangeLog
- 14:51, 21 November 2013 diff hist +120 EPACTS →Full ChangeLog
- 14:50, 21 November 2013 diff hist +120 EPACTS →Lastest ChangeLog
- 14:49, 21 November 2013 diff hist 0 EPACTS →Installation Details
- 12:22, 20 November 2013 diff hist +48 VcfCooker
- 12:49, 11 September 2013 diff hist +1 EPACTS →Detailed Options
- 12:36, 11 September 2013 diff hist +264 EPACTS →Output Files
- 15:52, 10 September 2013 diff hist -2 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites current
- 15:44, 10 September 2013 diff hist -1 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:41, 10 September 2013 diff hist +21 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:41, 10 September 2013 diff hist +950 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:37, 10 September 2013 diff hist +35 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:36, 10 September 2013 diff hist +1,997 PileupBasedVariantCalling →Producing pileups of sequence reads at variant sites
- 15:33, 10 September 2013 diff hist +4,294 N PileupBasedVariantCalling Created page with "== Overview == This page describes the procedure for pileup-based variant calling. The software package is currently in-house at Center for Statistical Genetics (CSG) at Univ..."
- 10:15, 9 August 2013 diff hist +6 UMAKE
- 10:14, 9 August 2013 diff hist +189 UMAKE
- 16:15, 6 August 2013 diff hist -11 Tutorial: GotCloud UW CMG →STEP 5 : All-in-one running of all scripts (for later use) current
- 16:12, 6 August 2013 diff hist +14,836 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 16:04, 6 August 2013 diff hist +8,870 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 15:49, 6 August 2013 diff hist +105 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 13:39, 6 August 2013 diff hist +83 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 12:59, 6 August 2013 diff hist +737 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 12:46, 6 August 2013 diff hist +1,442 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:39, 6 August 2013 diff hist -66 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:37, 6 August 2013 diff hist +6,524 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:21, 6 August 2013 diff hist +4,793 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 12:17, 6 August 2013 diff hist -2 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 12:16, 6 August 2013 diff hist +913 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 12:09, 6 August 2013 diff hist -22 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 12:09, 6 August 2013 diff hist +4,607 Tutorial: GotCloud UW CMG →Step 1 : GotCloud Alignment Pipeline
- 11:42, 6 August 2013 diff hist +1 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 10:30, 6 August 2013 diff hist 0 Tutorial: GotCloud UW CMG →STEP 3 : Run GotCloud SNP Calling Pipeline
- 05:29, 6 August 2013 diff hist +210 Tutorial: GotCloud UW CMG →STEP 4 : EPACTS association analysis
- 05:27, 6 August 2013 diff hist -60 Tutorial: GotCloud UW CMG
- 05:26, 6 August 2013 diff hist -28 Tutorial: GotCloud UW CMG →STEP 0 : Login to the cluster
- 05:26, 6 August 2013 diff hist +4,659 N Tutorial: GotCloud UW CMG Created page with '= GotCloud / EPACTS Tutorial = In this tutorial, we illustrate some of the essential steps in the analysis of next generation sequence data. For a background on GotCloud and Se…'
- 11:56, 14 May 2013 diff hist +1 EMMAX →IBS matrix or BN matrix?
- 11:47, 14 May 2013 diff hist +712 EMMAX →Frequently asked Questions