User contributions
From Genome Analysis Wiki
(newest | oldest) View (newer 250 | older 250) (20 | 50 | 100 | 250 | 500)
- 23:01, 19 April 2019 (diff | hist) . . (+10) . . BamUtil: recab (→Required Generic Parameters) (current)
- 23:00, 19 April 2019 (diff | hist) . . (+31) . . BamUtil: recab (→Handling Recalibration/Implementation Notes)
- 22:31, 8 April 2019 (diff | hist) . . (+10) . . BamUtil: dedup (→Required Parameters) (current)
- 22:31, 8 April 2019 (diff | hist) . . (+6) . . Template:InBAMInputFile (current)
- 22:30, 8 April 2019 (diff | hist) . . (+1) . . Template:InBAMInputFile
- 22:29, 8 April 2019 (diff | hist) . . (+42) . . Template:InBAMInputFile
- 22:19, 8 April 2019 (diff | hist) . . (+26) . . Template:InBAMInputFile
- 22:17, 8 April 2019 (diff | hist) . . (+120) . . Template:InBAMInputFile
- 22:03, 8 April 2019 (diff | hist) . . (+72) . . BamUtil: dedup (→Overview of the dedup function of bamUtil)
- 22:02, 8 April 2019 (diff | hist) . . (+76) . . BamUtil: dedup (→Implementation Notes)
- 21:46, 30 July 2018 (diff | hist) . . (+354) . . BamUtil
- 00:20, 13 November 2017 (diff | hist) . . (+264) . . LibStatGen Troubleshooting (→Possible Compile Errors) (current)
- 00:18, 13 November 2017 (diff | hist) . . (+273) . . Template:ToolGitRepo (current)
- 00:04, 13 November 2017 (diff | hist) . . (+913) . . LibStatGen Download (→Official Releases) (current)
- 23:55, 12 November 2017 (diff | hist) . . (+235) . . BamUtil (→Full Release (includes libStatGen))
- 23:49, 12 November 2017 (diff | hist) . . (+762) . . BamUtil (→Release of just BamUtil (does not include libStatGen))
- 23:28, 12 November 2017 (diff | hist) . . (+13) . . BamUtil: trimBam (→Soft Clipping Notes (--clip/-c)) (current)
- 23:28, 12 November 2017 (diff | hist) . . (+26) . . BamUtil: trimBam (→Soft Clipping Notes (--clip/-c))
- 15:29, 9 September 2017 (diff | hist) . . (0) . . VerifyBamID (→Command Line Options) (current)
- 15:59, 24 August 2017 (diff | hist) . . (+11) . . BamUtil: stats (→BaseQC (--pBaseQC and --cBaseQC and --baseSum)) (current)
- 15:58, 24 August 2017 (diff | hist) . . (+29) . . BamUtil: stats (→BaseQC (--pBaseQC and --cBaseQC and --baseSum))
- 15:57, 24 August 2017 (diff | hist) . . (+479) . . BamUtil: stats (→Parameters)
- 04:20, 14 June 2017 (diff | hist) . . (+30) . . VerifyBamID (→Column information in the output files)
- 15:42, 4 January 2017 (diff | hist) . . (+261) . . Nm User talk:Gzajac (Welcome!) (current)
- 15:42, 4 January 2017 (diff | hist) . . (+334) . . Nm User:Gzajac (Creating user page for new user.) (current)
- 22:30, 14 April 2016 (diff | hist) . . (+36) . . BamUtil: dedup (→Implementation Notes)
- 01:45, 6 March 2016 (diff | hist) . . (+26) . . BamUtil: gapInfo (→Rules) (current)
- 01:10, 6 March 2016 (diff | hist) . . (+1,246) . . BamUtil: recab (→Parameters)
- 01:07, 6 March 2016 (diff | hist) . . (-22) . . BamUtil: recab (→Skip Records with any of the Specified Flags (--buildExcludeFlags, --applyExcludeFlags))
- 00:45, 6 March 2016 (diff | hist) . . (-109) . . BamUtil: dedup (→Skip Records with any of the Specified Flags (--excludeFlags))
- 00:20, 6 March 2016 (diff | hist) . . (+143) . . BamUtil: dedup (→Skip Records with any of the Specified Flags (--excludeFlags))
- 00:15, 6 March 2016 (diff | hist) . . (+43) . . BamUtil: dedup (→Parameters)
- 00:01, 6 March 2016 (diff | hist) . . (+95) . . BamUtil: clipOverlap (→ASSUMPTIONS/RESTRICTIONS) (current)
- 00:00, 6 March 2016 (diff | hist) . . (0) . . BamUtil: clipOverlap (→Parameters)
- 23:59, 5 March 2016 (diff | hist) . . (-29) . . BamUtil: clipOverlap (→Skip Records with any of the Specified Flags (--excludeFlags))
- 23:53, 5 March 2016 (diff | hist) . . (+1,936) . . BamUtil: bam2FastQ (→Parameters) (current)
- 23:36, 5 March 2016 (diff | hist) . . (+102) . . BamUtil: bam2FastQ (→Usage)
- 23:35, 5 March 2016 (diff | hist) . . (-100) . . BamUtil: bam2FastQ (→Overview of the bam2FastQ function of bamUtil)
- 18:39, 28 January 2016 (diff | hist) . . (+257) . . GotCloud: Alignment Pipeline (→Optional Configurable Settings) (current)
- 23:00, 28 October 2015 (diff | hist) . . (-136) . . Releasing GotCloud
- 15:00, 19 August 2015 (diff | hist) . . (+261) . . Nm User talk:Pjvh (Welcome!) (current)
- 15:00, 19 August 2015 (diff | hist) . . (+445) . . Nm User:Pjvh (Creating user page for new user.)
- 14:56, 30 June 2015 (diff | hist) . . (+78) . . GotCloud: Creating a New Pipeline (→Example Pipelines Created)
- 14:51, 30 June 2015 (diff | hist) . . (+163) . . GotCloud: Creating a New Pipeline (→Overall Pipeline Definition)
- 14:50, 30 June 2015 (diff | hist) . . (0) . . GotCloud: Creating a New Pipeline (→Defining a New Pipeline)
- 14:50, 30 June 2015 (diff | hist) . . (+2,508) . . GotCloud: Creating a New Pipeline
- 14:12, 30 June 2015 (diff | hist) . . (+3,041) . . GotCloud: Creating a New Pipeline (→Configure Each Step)
- 13:08, 30 June 2015 (diff | hist) . . (+1,180) . . GotCloud: Creating a New Pipeline (→Defining a New Pipeline)
- 10:54, 23 June 2015 (diff | hist) . . (+921) . . GotCloud: FAQs (→Variant Calling Pipeline FAQs) (current)
- 12:52, 26 May 2015 (diff | hist) . . (+473) . . GotCloud
- 12:10, 22 May 2015 (diff | hist) . . (-12) . . SeqShop: Calling Your Own Genome, May 2015 (→Annotation / Lookup against dbSNP) (current)
- 10:49, 22 May 2015 (diff | hist) . . (+143) . . SeqShop: Calling Your Own Genome, May 2015 (→Friday)
- 10:40, 22 May 2015 (diff | hist) . . (+30) . . SeqShop: May 2015 (current)
- 10:40, 22 May 2015 (diff | hist) . . (0) . . N File:2015.05 - Workshop Closing.pdf (current)
- 09:44, 22 May 2015 (diff | hist) . . (-304) . . SeqShop: Calling Your Own Genome, May 2015
- 16:29, 21 May 2015 (diff | hist) . . (+12) . . SeqShop: Calling Your Own Genome, May 2015 (→FEEDBACK!)
- 14:57, 21 May 2015 (diff | hist) . . (+18) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Visualizing Ancestry) (current)
- 14:56, 21 May 2015 (diff | hist) . . (+6) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Estimate ancestry)
- 14:52, 21 May 2015 (diff | hist) . . (+1) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Visualizing Ancestry)
- 14:26, 21 May 2015 (diff | hist) . . (+30) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Estimate ancestry)
- 14:25, 21 May 2015 (diff | hist) . . (+5) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Visualizing Ancestry)
- 14:25, 21 May 2015 (diff | hist) . . (+10) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Estimate ancestry)
- 14:24, 21 May 2015 (diff | hist) . . (+5) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Step 2: pileup --> seq)
- 14:24, 21 May 2015 (diff | hist) . . (+6) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Setup your terminal)
- 14:22, 21 May 2015 (diff | hist) . . (-34) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Step 1: bam --> pileup)
- 14:15, 21 May 2015 (diff | hist) . . (0) . . SeqShop: Association Analysis, May 2015 (→Download & Build EPACTS) (current)
- 14:14, 21 May 2015 (diff | hist) . . (+14) . . SeqShop: Association Analysis, May 2015 (→Setup)
- 14:13, 21 May 2015 (diff | hist) . . (+218) . . SeqShop: Association Analysis, May 2015 (→Setup)
- 14:04, 21 May 2015 (diff | hist) . . (+340) . . SeqShop: Association Analysis, May 2015
- 10:22, 21 May 2015 (diff | hist) . . (+5) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Step 1: bam --> pileup)
- 09:06, 21 May 2015 (diff | hist) . . (+227) . . SeqShop: Estimates of Genetic Ancestry Practical, May 2015 (→Return to Workshop Wiki Page)
- 23:02, 20 May 2015 (diff | hist) . . (-38) . . SeqShop: May 2015
- 23:01, 20 May 2015 (diff | hist) . . (0) . . N File:Stratification.pptx (current)
- 11:43, 20 May 2015 (diff | hist) . . (+1) . . SeqShop: May 2015
- 11:43, 20 May 2015 (diff | hist) . . (0) . . N File:Seqshop genetic association analysis 150521.pptx (current)
- 11:23, 20 May 2015 (diff | hist) . . (+84) . . SeqShop: May 2015
- 11:22, 20 May 2015 (diff | hist) . . (+137) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Return to Workshop Wiki Page) (current)
- 11:19, 20 May 2015 (diff | hist) . . (-1,846) . . SeqShop: Calling Your Own Genome, May 2015
- 11:11, 20 May 2015 (diff | hist) . . (+39) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Setup your terminal)
- 11:09, 20 May 2015 (diff | hist) . . (+4) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Setup your terminal)
- 11:09, 20 May 2015 (diff | hist) . . (+12) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Run)
- 11:07, 20 May 2015 (diff | hist) . . (-24) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Setup your terminal)
- 10:23, 20 May 2015 (diff | hist) . . (+16) . . SeqShop: May 2015
- 10:16, 20 May 2015 (diff | hist) . . (0) . . N File:2015.05 - Workshop Intro.pdf (current)
- 10:01, 20 May 2015 (diff | hist) . . (-12) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Setup)
- 10:00, 20 May 2015 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Running GotCloud Indel)
- 09:48, 20 May 2015 (diff | hist) . . (-10) . . SeqShop: May 2015
- 09:48, 20 May 2015 (diff | hist) . . (0) . . N File:Seqshop 2015 non-SNP variation.pdf (current)
- 16:13, 19 May 2015 (diff | hist) . . (-3) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Running GotCloud/GenomeSTRiP Metadata Pipeline)
- 16:08, 19 May 2015 (diff | hist) . . (+33) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Reference Files)
- 16:08, 19 May 2015 (diff | hist) . . (+60) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Reference Files)
- 16:07, 19 May 2015 (diff | hist) . . (+112) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Reference Files)
- 15:37, 19 May 2015 (diff | hist) . . (+66) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (→Genotype Refinement Output)
- 15:05, 19 May 2015 (diff | hist) . . (-1,533) . . SeqShop: Association Analysis, May 2015
- 14:58, 19 May 2015 (diff | hist) . . (-2,032) . . SeqShop: Estimates of Genetic Ancestry Practical, May 2015
- 14:03, 19 May 2015 (diff | hist) . . (-901) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Comparison with other data sets)
- 14:02, 19 May 2015 (diff | hist) . . (+218) . . Nm User:Carol Yuan (Creating user page for new user.) (current)
- 14:02, 19 May 2015 (diff | hist) . . (+258) . . Nm User talk:Carol Yuan (Welcome!) (current)
- 13:42, 19 May 2015 (diff | hist) . . (-1) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Setup)
- 13:42, 19 May 2015 (diff | hist) . . (+31) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (→Setup)
- 12:26, 19 May 2015 (diff | hist) . . (-715) . . SeqShop: Ancestry On Your Own Genome, May 2015 (→Setup your terminal)
- 12:25, 19 May 2015 (diff | hist) . . (+13) . . SeqShop: Calling Your Own Genome, May 2015 (→Thursday)
- 12:23, 19 May 2015 (diff | hist) . . (-652) . . SeqShop: Calling Your Own Genome, May 2015 (→Thursday)
- 10:37, 19 May 2015 (diff | hist) . . (-1,137) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
- 09:57, 19 May 2015 (diff | hist) . . (+138) . . SeqShop: Calling Your Own Genome, May 2015 (→Log Out)
- 09:56, 19 May 2015 (diff | hist) . . (+14) . . SeqShop: Calling Your Own Genome, May 2015 (→Running INDEL)
- 09:54, 19 May 2015 (diff | hist) . . (-47) . . SeqShop: Calling Your Own Genome, May 2015 (→Configuring Indel)
- 23:31, 18 May 2015 (diff | hist) . . (+1) . . SeqShop: Calling Your Own Genome, May 2015 (→FEEDBACK!)
- 23:31, 18 May 2015 (diff | hist) . . (+140) . . SeqShop: Calling Your Own Genome, May 2015 (→Log Out)
- 23:28, 18 May 2015 (diff | hist) . . (-16) . . SeqShop: Calling Your Own Genome, May 2015 (→Wednesday)
- 23:27, 18 May 2015 (diff | hist) . . (-8) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline)
- 23:25, 18 May 2015 (diff | hist) . . (+25) . . SeqShop: Calling Your Own Genome, May 2015 (→Running SNP Calling)
- 23:25, 18 May 2015 (diff | hist) . . (-1,601) . . SeqShop: Calling Your Own Genome, May 2015 (→Start SNP Calling)
- 23:19, 18 May 2015 (diff | hist) . . (-3) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Running GotCloud/GenomeSTRiP Genotyping Pipeline)
- 23:18, 18 May 2015 (diff | hist) . . (-41) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Running GotCloud/GenomeSTRiP Discovery Pipeline)
- 23:11, 18 May 2015 (diff | hist) . . (-13) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Setup)
- 23:11, 18 May 2015 (diff | hist) . . (+13) . . SeqShop: Analysis of Structural Variation Practical, May 2015 (→Setup)
- 23:07, 18 May 2015 (diff | hist) . . (-1,048) . . SeqShop: Analysis of Structural Variation Practical, May 2015
- 22:59, 18 May 2015 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (→Running GotCloud Genotype Refinement)
- 22:57, 18 May 2015 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (→Run GotCloud SnpCall)
- 22:48, 18 May 2015 (diff | hist) . . (+48) . . SeqShop: Calling Your Own Genome, May 2015 (→Setup Variables)
- 22:47, 18 May 2015 (diff | hist) . . (0) . . SeqShop: Calling Your Own Genome, May 2015
- 22:47, 18 May 2015 (diff | hist) . . (-259) . . SeqShop: Calling Your Own Genome, May 2015 (→Tuesday - Start INDEL Calling)
- 22:12, 18 May 2015 (diff | hist) . . (-433) . . SeqShop: Calling Your Own Genome, May 2015 (→Need a BAM Index File?)
- 11:34, 18 May 2015 (diff | hist) . . (-68) . . SeqShop: Aligning Your Own Genome, May 2015 (current)
- 17:19, 17 May 2015 (diff | hist) . . (-1,185) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
- 17:04, 17 May 2015 (diff | hist) . . (-58) . . SeqShop: May 2015
- 17:02, 17 May 2015 (diff | hist) . . (0) . . N File:Mapping and assembly May2015.pdf (current)
- 17:02, 17 May 2015 (diff | hist) . . (0) . . N File:Analysis of SV May2015.pdf (current)
- 17:00, 17 May 2015 (diff | hist) . . (0) . . File:Mapping and assembly.pdf (Mktrost uploaded a new version of "File:Mapping and assembly.pdf": Reverted to version as of 13:19, 16 June 2014) (current)
- 16:58, 17 May 2015 (diff | hist) . . (0) . . File:Mapping and assembly.pdf (Mktrost uploaded a new version of "File:Mapping and assembly.pdf")
- 16:57, 17 May 2015 (diff | hist) . . (+13) . . SeqShop: Aligning Your Own Genome, May 2015 (→Recalibration Comparison)
- 16:56, 17 May 2015 (diff | hist) . . (+1) . . SeqShop: Aligning Your Own Genome, May 2015
- 16:54, 17 May 2015 (diff | hist) . . (-57) . . Template:SeqShopLoginSubMachine (→Login to the seqshop Machine) (current)
- 16:32, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Sequence Mapping and Assembly Practical, May 2015 (→Setup)
- 16:31, 17 May 2015 (diff | hist) . . (-666) . . SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 16:18, 17 May 2015 (diff | hist) . . (+9) . . Template:SeqShopLogin (current)
- 16:18, 17 May 2015 (diff | hist) . . (+419) . . N Template:SeqShopLoginSubMachine (Created page with "=== Login to the seqshop Machine === So you can each run multiple jobs at once, we will have you run on 4 different machines within our seqshop setup. * You can only access th...")
- 16:17, 17 May 2015 (diff | hist) . . (-2,462) . . Template:SeqShopLogin (Replaced content with "{{SeqShopLoginA}} {{SeqShopLoginB}}")
- 16:16, 17 May 2015 (diff | hist) . . (+2,076) . . N Template:SeqShopLoginA (Created page with "=== Login to the seqshop-server Linux Machine === <div class="mw-collapsible" style="width:600px"> '' This section will appear redundantly in each session. If you are already ...") (current)
- 15:58, 17 May 2015 (diff | hist) . . (0) . . N File:May2015 SeqShop - GotCloud indel.pdf (current)
- 15:58, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (→Introduction)
- 15:57, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (→Introduction)
- 15:57, 17 May 2015 (diff | hist) . . (0) . . N File:May2015 SeqShop - GotCloud snpcall.pdf (current)
- 15:35, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Aligning Your Own Genome, May 2015 (→FEEDBACK!)
- 15:25, 17 May 2015 (diff | hist) . . (0) . . N File:May2015 SeqShop - GotCloud Align.pdf (current)
- 15:24, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Sequence Mapping and Assembly Practical, May 2015 (→Introduction)
- 15:24, 17 May 2015 (diff | hist) . . (0) . . SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 15:21, 17 May 2015 (diff | hist) . . (-5) . . SeqShop: Sequence Mapping and Assembly Practical (Redirected page to SeqShop: Sequence Mapping and Assembly Practical, May 2015) (current)
- 15:19, 17 May 2015 (diff | hist) . . (0) . . File:May2015 SeqShop - Linux.pdf (Mktrost uploaded a new version of "File:May2015 SeqShop - Linux.pdf") (current)
- 15:16, 17 May 2015 (diff | hist) . . (0) . . N File:May2015 SeqShop - Linux.pdf
- 16:35, 15 May 2015 (diff | hist) . . (-4) . . SeqShop: Sequence Mapping and Assembly Practical, December 2014 (→Download the example data) (current)
- 16:33, 15 May 2015 (diff | hist) . . (0) . . SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 12:17, 14 May 2015 (diff | hist) . . (+447) . . GotCloud: Versions (→Version 1.16 (Full Release on 2/25/2015)) (current)
- 12:00, 14 May 2015 (diff | hist) . . (0) . . GotCloud: Genetic Reference and Resource Files (→DBSNP VCF File) (current)
- 10:15, 14 May 2015 (diff | hist) . . (0) . . SeqShop: Sequence Mapping and Assembly Practical, May 2015 (→Download & Build GotCloud)
- 18:11, 12 March 2015 (diff | hist) . . (+191) . . BamUtil: clipOverlap (→Overview of the clipOverlap function of bamUtil)
- 18:09, 12 March 2015 (diff | hist) . . (+92) . . BamUtil: clipOverlap (→Parameters)
- 18:09, 12 March 2015 (diff | hist) . . (+406) . . BamUtil: clipOverlap (→Skip Records with any of the Specified Flags (--excludeFlags))
- 15:04, 12 March 2015 (diff | hist) . . (+427) . . BamUtil: trimBam
- 14:51, 12 March 2015 (diff | hist) . . (+247) . . BamUtil: trimBam (→Usage)
- 13:52, 9 March 2015 (diff | hist) . . (+820) . . GotCloud: Creating a New Pipeline
- 13:04, 9 March 2015 (diff | hist) . . (+106) . . GotCloud (→Running GotCloud Software)
- 11:36, 9 March 2015 (diff | hist) . . (-3) . . BamUtil: trimBam (→Optional parameters)
- 11:08, 9 March 2015 (diff | hist) . . (+680) . . BamUtil: trimBam (→Parameters)
- 11:05, 9 March 2015 (diff | hist) . . (+604) . . BamUtil: trimBam (→Usage)
- 11:03, 9 March 2015 (diff | hist) . . (+79) . . BamUtil: trimBam (→Overview of the trimBam function of bamUtil)
- 11:02, 9 March 2015 (diff | hist) . . (+23) . . Template:BamUtilPrograms (current)
- 14:23, 6 March 2015 (diff | hist) . . (+1,207) . . GotCloud: Variant Calling Pipeline (→Running)
- 16:39, 3 March 2015 (diff | hist) . . (+1,753) . . GotCloud: Creating a New Pipeline (→Creating a New BAM Processing Pipeline)
- 10:50, 2 March 2015 (diff | hist) . . (+925) . . GotCloud: FAQs (→Variant Calling Pipeline FAQs)
- 16:49, 26 February 2015 (diff | hist) . . (+1,918) . . GotCloud: FAQs (→Compiling FAQs)
- 16:38, 26 February 2015 (diff | hist) . . (0) . . GotCloud: FAQs (→Compiling FAQs)
- 16:38, 26 February 2015 (diff | hist) . . (+1,276) . . GotCloud: FAQs (→Compiling FAQs)
- 16:30, 26 February 2015 (diff | hist) . . (+528) . . GotCloud: FAQs (→Version Problems)
- 15:15, 26 February 2015 (diff | hist) . . (+1) . . Releasing GotCloud
- 15:14, 26 February 2015 (diff | hist) . . (+539) . . Releasing GotCloud
- 14:58, 26 February 2015 (diff | hist) . . (+101) . . GotCloud: Versions
- 14:48, 26 February 2015 (diff | hist) . . (+1,058) . . GotCloud: Versions (→Version 1.16 (Full Release on 2/25/2015))
- 14:18, 26 February 2015 (diff | hist) . . (+81) . . GotCloud: Genetic Reference and Resource Files (→Downloadable Reference and Resource Files)
- 14:11, 26 February 2015 (diff | hist) . . (+329) . . GotCloud: Alignment Pipeline (→Recommended Settings)
- 18:39, 25 February 2015 (diff | hist) . . (+65) . . GotCloud: Versions
- 18:28, 25 February 2015 (diff | hist) . . (-468) . . Releasing GotCloud
- 18:03, 25 February 2015 (diff | hist) . . (+1) . . GotCloud (→UMich Development/Release How-To Notes)
- 18:03, 25 February 2015 (diff | hist) . . (0) . . m Releasing GotCloud (Mktrost moved page Creating Packages to Releasing GotCloud)
- 18:03, 25 February 2015 (diff | hist) . . (+32) . . N Creating Packages (Mktrost moved page Creating Packages to Releasing GotCloud) (current)
- 11:53, 24 February 2015 (diff | hist) . . (+203) . . GotCloud: Genetic Reference and Resource Files (→Downloadable Reference and Resource Files)
- 14:13, 23 February 2015 (diff | hist) . . (+18) . . GotCloud (→UMich Development/Release How-To Notes)
- 14:11, 23 February 2015 (diff | hist) . . (+27) . . GotCloud (→UMich Development/Release How-To Notes)
- 10:13, 23 February 2015 (diff | hist) . . (+53) . . QPLOT (→Parameters)
- 10:11, 23 February 2015 (diff | hist) . . (+10) . . QPLOT (→Parameters)
- 12:27, 20 February 2015 (diff | hist) . . (+88) . . GotCloud: Creating a New Pipeline
- 12:25, 20 February 2015 (diff | hist) . . (+132) . . N GotCloud: Creating a New Pipeline (Created page with "== Creating a New BAM Processing Pipeline == GotCloud allows you to configure new basic BAM processing pipelines via configuration.")
- 12:17, 20 February 2015 (diff | hist) . . (-3) . . BamUtil (→Full Release (includes libStatGen))
- 12:16, 20 February 2015 (diff | hist) . . (0) . . N File:BamUtilLibStatGen.1.0.13.tgz (current)
- 12:12, 20 February 2015 (diff | hist) . . (+339) . . BamUtil (→Full Release (includes libStatGen))
- 11:43, 20 February 2015 (diff | hist) . . (+741) . . BamUtil (→Release of just BamUtil (does not include libStatGen))
- 11:06, 20 February 2015 (diff | hist) . . (+1,029) . . LibStatGen Download (→Official Releases)
- 16:20, 19 February 2015 (diff | hist) . . (-405) . . LibStatGen Troubleshooting (→Possible Compile Errors)
- 16:06, 19 February 2015 (diff | hist) . . (0) . . C++ Library: libStatGen
- 14:57, 11 February 2015 (diff | hist) . . (+4) . . GotCloud: Variant Calling Options (→Chromosome X Calling) (current)
- 18:47, 10 February 2015 (diff | hist) . . (+2,006) . . GotCloud: GenomeSTRiP Pipeline (→Configuration File) (current)
- 18:18, 10 February 2015 (diff | hist) . . (+1) . . GotCloud: GenomeSTRiP Pipeline (→Analysis Region Options)
- 17:13, 10 February 2015 (diff | hist) . . (+3,346) . . GotCloud: GenomeSTRiP Pipeline (→Running GotCloud/GenomeSTRiP)
- 16:46, 10 February 2015 (diff | hist) . . (+311) . . GotCloud: GenomeSTRiP Pipeline (→BAM List File)
- 16:46, 10 February 2015 (diff | hist) . . (+66) . . GotCloud: Variant Calling Pipeline (→BAM List File)
- 16:45, 10 February 2015 (diff | hist) . . (+299) . . GotCloud: Variant Calling Pipeline (→BAM List File)
- 16:42, 10 February 2015 (diff | hist) . . (+1,928) . . GotCloud: GenomeSTRiP Pipeline (→Input Data)
- 15:03, 10 February 2015 (diff | hist) . . (+700) . . GotCloud: GenomeSTRiP Pipeline (→Running GotCloud/GenomeSTRiP)
- 14:18, 10 February 2015 (diff | hist) . . (-28) . . GotCloud: GenomeSTRiP Pipeline (→Running GotCloud/GenomeSTRiP)
- 13:03, 10 February 2015 (diff | hist) . . (+41) . . GotCloud: GenomeSTRiP Pipeline (→Genotyping Pipeline)
- 13:02, 10 February 2015 (diff | hist) . . (+50) . . GotCloud: GenomeSTRiP Pipeline (→Discovery Pipeline)
- 13:02, 10 February 2015 (diff | hist) . . (+886) . . GotCloud: GenomeSTRiP Pipeline (→Running GotCloud/GenomeSTRiP)
- 12:49, 10 February 2015 (diff | hist) . . (+1) . . GotCloud: GenomeSTRiP Pipeline (→Metadata Pipeline)
- 18:36, 9 February 2015 (diff | hist) . . (+1,592) . . GotCloud: GenomeSTRiP Pipeline
- 18:15, 9 February 2015 (diff | hist) . . (+3,007) . . N GotCloud: GenomeSTRiP Pipeline (Created page with "Back to parent: GotCloud == GenomeSTRiP == GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics:...")
- 12:44, 6 February 2015 (diff | hist) . . (-1) . . Screen Commands (current)
- 12:44, 6 February 2015 (diff | hist) . . (+215) . . Screen Commands
- 10:39, 19 January 2015 (diff | hist) . . (+911) . . GotCloud: FAQs (→Variant Calling Pipeline FAQs)
- 14:42, 13 January 2015 (diff | hist) . . (+180) . . GotCloud: Genetic Reference and Resource Files (→Downloadable Reference and Resource Files)
- 11:39, 7 January 2015 (diff | hist) . . (+189) . . GotCloud: Alignment Pipeline (→Configuration File)
- 14:40, 5 January 2015 (diff | hist) . . (-4) . . GotCloud: Genetic Reference and Resource Files (→Genetic Reference and Resource Files)
- 12:17, 18 December 2014 (diff | hist) . . (+313) . . SeqShop: December 2014 (current)
- 18:08, 17 December 2014 (diff | hist) . . (+22) . . SeqShop: Sequence Mapping and Assembly Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 18:02, 17 December 2014 (diff | hist) . . (+11) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Run Groupwise Test)
- 18:02, 17 December 2014 (diff | hist) . . (-3) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Run Groupwise Test)
- 17:57, 17 December 2014 (diff | hist) . . (-1) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Run Groupwise Test)
- 17:56, 17 December 2014 (diff | hist) . . (0) . . File:Single.epacts.qq.png (Mktrost uploaded a new version of "File:Single.epacts.qq.png") (current)
- 17:53, 17 December 2014 (diff | hist) . . (+2) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Single Variant Association Analysis)
- 17:43, 17 December 2014 (diff | hist) . . (0) . . SeqShop: Genetic Association Analysis Practical, December 2014
- 17:43, 17 December 2014 (diff | hist) . . (-64) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Return to Ancestry on your own genome)
- 17:42, 17 December 2014 (diff | hist) . . (+53) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Introduction)
- 17:26, 17 December 2014 (diff | hist) . . (+18) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:25, 17 December 2014 (diff | hist) . . (+66) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:23, 17 December 2014 (diff | hist) . . (-2) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:21, 17 December 2014 (diff | hist) . . (+64) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:14, 17 December 2014 (diff | hist) . . (-64) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:13, 17 December 2014 (diff | hist) . . (-13) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup when running on your own outside of the SeqShop Workshop)
- 17:12, 17 December 2014 (diff | hist) . . (+13) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Setup in person at the SeqShop Workshop)
- 17:10, 17 December 2014 (diff | hist) . . (+53) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Introduction)
- 17:10, 17 December 2014 (diff | hist) . . (-44) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Restarting SNP Call on your own Genome)
- 17:09, 17 December 2014 (diff | hist) . . (+99) . . SeqShop: Analysis of Structural Variation Practical, December 2014 (→What does a real SV look like?) (current)
- 17:09, 17 December 2014 (diff | hist) . . (+99) . . SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 (→Normalization) (current)
- 17:09, 17 December 2014 (diff | hist) . . (+99) . . SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 (→What is GotCloud snpcall doing?)
- 17:09, 17 December 2014 (diff | hist) . . (+98) . . SeqShop: Sequence Mapping and Assembly Practical, December 2014 (→Logging Off)
- 17:08, 17 December 2014 (diff | hist) . . (-139) . . SeqShop: Analysis of Structural Variation Practical, December 2014 (→Starting SNP Call on your own Genome)
- 16:35, 17 December 2014 (diff | hist) . . (0) . . SeqShop: Analysis of Structural Variation Practical, December 2014 (→How many variants are filtered out?)
- 16:17, 17 December 2014 (diff | hist) . . (+13) . . SeqShop: Analysis of Structural Variation Practical, December 2014
- 16:15, 17 December 2014 (diff | hist) . . (+14) . . SeqShop: Analysis of Structural Variation Practical, December 2014 (→Introduction)
- 16:09, 17 December 2014 (diff | hist) . . (0) . . SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 (→Comparison with other data sets)
(newest | oldest) View (newer 250 | older 250) (20 | 50 | 100 | 250 | 500)
