User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 22:01, 19 April 2019 diff hist +10 BamUtil: recab →Required Generic Parameters current
- 22:00, 19 April 2019 diff hist +31 BamUtil: recab →Handling Recalibration/Implementation Notes
- 21:31, 8 April 2019 diff hist +10 BamUtil: dedup →Required Parameters current
- 21:31, 8 April 2019 diff hist +6 Template:InBAMInputFile current
- 21:30, 8 April 2019 diff hist +1 Template:InBAMInputFile
- 21:29, 8 April 2019 diff hist +42 Template:InBAMInputFile
- 21:19, 8 April 2019 diff hist +26 Template:InBAMInputFile
- 21:17, 8 April 2019 diff hist +120 Template:InBAMInputFile
- 21:03, 8 April 2019 diff hist +72 BamUtil: dedup →Overview of the dedup function of bamUtil
- 21:02, 8 April 2019 diff hist +76 BamUtil: dedup →Implementation Notes
- 20:46, 30 July 2018 diff hist +354 BamUtil
- 23:20, 12 November 2017 diff hist +264 LibStatGen Troubleshooting →Possible Compile Errors current
- 23:18, 12 November 2017 diff hist +273 Template:ToolGitRepo current
- 23:04, 12 November 2017 diff hist +913 LibStatGen Download →Official Releases current
- 22:55, 12 November 2017 diff hist +235 BamUtil →Full Release (includes libStatGen)
- 22:49, 12 November 2017 diff hist +762 BamUtil →Release of just BamUtil (does not include libStatGen)
- 22:28, 12 November 2017 diff hist +13 BamUtil: trimBam →Soft Clipping Notes (--clip/-c) current
- 22:28, 12 November 2017 diff hist +26 BamUtil: trimBam →Soft Clipping Notes (--clip/-c)
- 14:29, 9 September 2017 diff hist 0 VerifyBamID →Command Line Options current
- 14:59, 24 August 2017 diff hist +11 BamUtil: stats →BaseQC (--pBaseQC and --cBaseQC and --baseSum) current
- 14:58, 24 August 2017 diff hist +29 BamUtil: stats →BaseQC (--pBaseQC and --cBaseQC and --baseSum)
- 14:57, 24 August 2017 diff hist +479 BamUtil: stats →Parameters
- 03:20, 14 June 2017 diff hist +30 VerifyBamID →Column information in the output files
- 14:42, 4 January 2017 diff hist +261 Nm User talk:Gzajac Welcome! current
- 14:42, 4 January 2017 diff hist +334 Nm User:Gzajac Creating user page for new user. current
- 21:30, 14 April 2016 diff hist +36 BamUtil: dedup →Implementation Notes
- 00:45, 6 March 2016 diff hist +26 BamUtil: gapInfo →Rules current
- 00:10, 6 March 2016 diff hist +1,246 BamUtil: recab →Parameters
- 00:07, 6 March 2016 diff hist -22 BamUtil: recab →Skip Records with any of the Specified Flags (--buildExcludeFlags, --applyExcludeFlags)
- 23:45, 5 March 2016 diff hist -109 BamUtil: dedup →Skip Records with any of the Specified Flags (--excludeFlags)
- 23:20, 5 March 2016 diff hist +143 BamUtil: dedup →Skip Records with any of the Specified Flags (--excludeFlags)
- 23:15, 5 March 2016 diff hist +43 BamUtil: dedup →Parameters
- 23:01, 5 March 2016 diff hist +95 BamUtil: clipOverlap →ASSUMPTIONS/RESTRICTIONS current
- 23:00, 5 March 2016 diff hist 0 BamUtil: clipOverlap →Parameters
- 22:59, 5 March 2016 diff hist -29 BamUtil: clipOverlap →Skip Records with any of the Specified Flags (--excludeFlags)
- 22:53, 5 March 2016 diff hist +1,936 BamUtil: bam2FastQ →Parameters current
- 22:36, 5 March 2016 diff hist +102 BamUtil: bam2FastQ →Usage
- 22:35, 5 March 2016 diff hist -100 BamUtil: bam2FastQ →Overview of the bam2FastQ function of bamUtil
- 17:39, 28 January 2016 diff hist +257 GotCloud: Alignment Pipeline →Optional Configurable Settings current
- 22:00, 28 October 2015 diff hist -136 Releasing GotCloud
- 14:00, 19 August 2015 diff hist +261 Nm User talk:Pjvh Welcome! current
- 14:00, 19 August 2015 diff hist +445 Nm User:Pjvh Creating user page for new user.
- 13:56, 30 June 2015 diff hist +78 GotCloud: Creating a New Pipeline →Example Pipelines Created
- 13:51, 30 June 2015 diff hist +163 GotCloud: Creating a New Pipeline →Overall Pipeline Definition
- 13:50, 30 June 2015 diff hist 0 GotCloud: Creating a New Pipeline →Defining a New Pipeline
- 13:50, 30 June 2015 diff hist +2,508 GotCloud: Creating a New Pipeline
- 13:12, 30 June 2015 diff hist +3,041 GotCloud: Creating a New Pipeline →Configure Each Step
- 12:08, 30 June 2015 diff hist +1,180 GotCloud: Creating a New Pipeline →Defining a New Pipeline
- 09:54, 23 June 2015 diff hist +921 GotCloud: FAQs →Variant Calling Pipeline FAQs current
- 11:52, 26 May 2015 diff hist +473 GotCloud
- 11:10, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP current
- 09:49, 22 May 2015 diff hist +143 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 09:40, 22 May 2015 diff hist +30 SeqShop: May 2015 current
- 09:40, 22 May 2015 diff hist 0 N File:2015.05 - Workshop Closing.pdf current
- 08:44, 22 May 2015 diff hist -304 SeqShop: Calling Your Own Genome, May 2015
- 15:29, 21 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →FEEDBACK!
- 13:57, 21 May 2015 diff hist +18 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry current
- 13:56, 21 May 2015 diff hist +6 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 13:52, 21 May 2015 diff hist +1 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry
- 13:26, 21 May 2015 diff hist +30 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 13:25, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry
- 13:25, 21 May 2015 diff hist +10 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 13:24, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 2: pileup --> seq
- 13:24, 21 May 2015 diff hist +6 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 13:22, 21 May 2015 diff hist -34 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 1: bam --> pileup
- 13:15, 21 May 2015 diff hist 0 SeqShop: Association Analysis, May 2015 →Download & Build EPACTS current
- 13:14, 21 May 2015 diff hist +14 SeqShop: Association Analysis, May 2015 →Setup
- 13:13, 21 May 2015 diff hist +218 SeqShop: Association Analysis, May 2015 →Setup
- 13:04, 21 May 2015 diff hist +340 SeqShop: Association Analysis, May 2015
- 09:22, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 1: bam --> pileup
- 08:06, 21 May 2015 diff hist +227 SeqShop: Estimates of Genetic Ancestry Practical, May 2015 →Return to Workshop Wiki Page
- 22:02, 20 May 2015 diff hist -38 SeqShop: May 2015
- 22:01, 20 May 2015 diff hist 0 N File:Stratification.pptx current
- 10:43, 20 May 2015 diff hist +1 SeqShop: May 2015
- 10:43, 20 May 2015 diff hist 0 N File:Seqshop genetic association analysis 150521.pptx current
- 10:23, 20 May 2015 diff hist +84 SeqShop: May 2015
- 10:22, 20 May 2015 diff hist +137 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Return to Workshop Wiki Page current
- 10:19, 20 May 2015 diff hist -1,846 SeqShop: Calling Your Own Genome, May 2015
- 10:11, 20 May 2015 diff hist +39 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 10:09, 20 May 2015 diff hist +4 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 10:09, 20 May 2015 diff hist +12 SeqShop: Ancestry On Your Own Genome, May 2015 →Run
- 10:07, 20 May 2015 diff hist -24 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 09:23, 20 May 2015 diff hist +16 SeqShop: May 2015
- 09:16, 20 May 2015 diff hist 0 N File:2015.05 - Workshop Intro.pdf current
- 09:01, 20 May 2015 diff hist -12 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Setup
- 09:00, 20 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Running GotCloud Indel
- 08:48, 20 May 2015 diff hist -10 SeqShop: May 2015
- 08:48, 20 May 2015 diff hist 0 N File:Seqshop 2015 non-SNP variation.pdf current
- 15:13, 19 May 2015 diff hist -3 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 15:08, 19 May 2015 diff hist +33 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 15:08, 19 May 2015 diff hist +60 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 15:07, 19 May 2015 diff hist +112 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 14:37, 19 May 2015 diff hist +66 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Genotype Refinement Output
- 14:05, 19 May 2015 diff hist -1,533 SeqShop: Association Analysis, May 2015
- 13:58, 19 May 2015 diff hist -2,032 SeqShop: Estimates of Genetic Ancestry Practical, May 2015
- 13:03, 19 May 2015 diff hist -901 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Comparison with other data sets
- 13:02, 19 May 2015 diff hist +258 Nm User talk:Carol Yuan Welcome! current
- 13:02, 19 May 2015 diff hist +218 Nm User:Carol Yuan Creating user page for new user. current
- 12:42, 19 May 2015 diff hist -1 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Setup
- 12:42, 19 May 2015 diff hist +31 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Setup
- 11:26, 19 May 2015 diff hist -715 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 11:25, 19 May 2015 diff hist +13 SeqShop: Calling Your Own Genome, May 2015 →Thursday
- 11:23, 19 May 2015 diff hist -652 SeqShop: Calling Your Own Genome, May 2015 →Thursday
- 09:37, 19 May 2015 diff hist -1,137 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
- 08:57, 19 May 2015 diff hist +138 SeqShop: Calling Your Own Genome, May 2015 →Log Out
- 08:56, 19 May 2015 diff hist +14 SeqShop: Calling Your Own Genome, May 2015 →Running INDEL
- 08:54, 19 May 2015 diff hist -47 SeqShop: Calling Your Own Genome, May 2015 →Configuring Indel
- 22:31, 18 May 2015 diff hist +1 SeqShop: Calling Your Own Genome, May 2015 →FEEDBACK!
- 22:31, 18 May 2015 diff hist +140 SeqShop: Calling Your Own Genome, May 2015 →Log Out
- 22:28, 18 May 2015 diff hist -16 SeqShop: Calling Your Own Genome, May 2015 →Wednesday
- 22:27, 18 May 2015 diff hist -8 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 22:25, 18 May 2015 diff hist +25 SeqShop: Calling Your Own Genome, May 2015 →Running SNP Calling
- 22:25, 18 May 2015 diff hist -1,601 SeqShop: Calling Your Own Genome, May 2015 →Start SNP Calling
- 22:19, 18 May 2015 diff hist -3 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 22:18, 18 May 2015 diff hist -41 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 22:11, 18 May 2015 diff hist -13 SeqShop: Analysis of Structural Variation Practical, May 2015 →Setup
- 22:11, 18 May 2015 diff hist +13 SeqShop: Analysis of Structural Variation Practical, May 2015 →Setup
- 22:07, 18 May 2015 diff hist -1,048 SeqShop: Analysis of Structural Variation Practical, May 2015
- 21:59, 18 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Running GotCloud Genotype Refinement
- 21:57, 18 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Run GotCloud SnpCall
- 21:48, 18 May 2015 diff hist +48 SeqShop: Calling Your Own Genome, May 2015 →Setup Variables
- 21:47, 18 May 2015 diff hist 0 SeqShop: Calling Your Own Genome, May 2015
- 21:47, 18 May 2015 diff hist -259 SeqShop: Calling Your Own Genome, May 2015 →Tuesday - Start INDEL Calling
- 21:12, 18 May 2015 diff hist -433 SeqShop: Calling Your Own Genome, May 2015 →Need a BAM Index File?
- 10:34, 18 May 2015 diff hist -68 SeqShop: Aligning Your Own Genome, May 2015 current
- 16:19, 17 May 2015 diff hist -1,185 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
- 16:04, 17 May 2015 diff hist -58 SeqShop: May 2015
- 16:02, 17 May 2015 diff hist 0 N File:Mapping and assembly May2015.pdf current
- 16:02, 17 May 2015 diff hist 0 N File:Analysis of SV May2015.pdf current
- 16:00, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf": Reverted to version as of 13:19, 16 June 2014 current
- 15:58, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf"
- 15:57, 17 May 2015 diff hist +13 SeqShop: Aligning Your Own Genome, May 2015 →Recalibration Comparison
- 15:56, 17 May 2015 diff hist +1 SeqShop: Aligning Your Own Genome, May 2015
- 15:54, 17 May 2015 diff hist -57 Template:SeqShopLoginSubMachine →Login to the seqshop Machine current
- 15:32, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 15:31, 17 May 2015 diff hist -666 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 15:18, 17 May 2015 diff hist +9 Template:SeqShopLogin current
- 15:18, 17 May 2015 diff hist +419 N Template:SeqShopLoginSubMachine Created page with "=== Login to the seqshop Machine === So you can each run multiple jobs at once, we will have you run on 4 different machines within our seqshop setup. * You can only access th..."
- 15:17, 17 May 2015 diff hist -2,462 Template:SeqShopLogin Replaced content with "{{SeqShopLoginA}} {{SeqShopLoginB}}"
- 15:16, 17 May 2015 diff hist +2,076 N Template:SeqShopLoginA Created page with "=== Login to the seqshop-server Linux Machine === <div class="mw-collapsible" style="width:600px"> '' This section will appear redundantly in each session. If you are already ..." current
- 14:58, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud indel.pdf current
- 14:58, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Introduction
- 14:57, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Introduction
- 14:57, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud snpcall.pdf current
- 14:35, 17 May 2015 diff hist 0 SeqShop: Aligning Your Own Genome, May 2015 →FEEDBACK!
- 14:25, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud Align.pdf current
- 14:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Introduction
- 14:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 14:21, 17 May 2015 diff hist -5 SeqShop: Sequence Mapping and Assembly Practical Redirected page to SeqShop: Sequence Mapping and Assembly Practical, May 2015 current
- 14:19, 17 May 2015 diff hist 0 File:May2015 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:May2015 SeqShop - Linux.pdf" current
- 14:16, 17 May 2015 diff hist 0 N File:May2015 SeqShop - Linux.pdf
- 15:35, 15 May 2015 diff hist -4 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Download the example data current
- 15:33, 15 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 11:17, 14 May 2015 diff hist +447 GotCloud: Versions →Version 1.16 (Full Release on 2/25/2015) current
- 11:00, 14 May 2015 diff hist 0 GotCloud: Genetic Reference and Resource Files →DBSNP VCF File current
- 09:15, 14 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud
- 17:11, 12 March 2015 diff hist +191 BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil
- 17:09, 12 March 2015 diff hist +92 BamUtil: clipOverlap →Parameters
- 17:09, 12 March 2015 diff hist +406 BamUtil: clipOverlap →Skip Records with any of the Specified Flags (--excludeFlags)
- 14:04, 12 March 2015 diff hist +427 BamUtil: trimBam
- 13:51, 12 March 2015 diff hist +247 BamUtil: trimBam →Usage
- 12:52, 9 March 2015 diff hist +820 GotCloud: Creating a New Pipeline
- 12:04, 9 March 2015 diff hist +106 GotCloud →Running GotCloud Software
- 10:36, 9 March 2015 diff hist -3 BamUtil: trimBam →Optional parameters
- 10:08, 9 March 2015 diff hist +680 BamUtil: trimBam →Parameters
- 10:05, 9 March 2015 diff hist +604 BamUtil: trimBam →Usage
- 10:03, 9 March 2015 diff hist +79 BamUtil: trimBam →Overview of the trimBam function of bamUtil
- 10:02, 9 March 2015 diff hist +23 Template:BamUtilPrograms current
- 13:23, 6 March 2015 diff hist +1,207 GotCloud: Variant Calling Pipeline →Running
- 15:39, 3 March 2015 diff hist +1,753 GotCloud: Creating a New Pipeline →Creating a New BAM Processing Pipeline
- 09:50, 2 March 2015 diff hist +925 GotCloud: FAQs →Variant Calling Pipeline FAQs
- 15:49, 26 February 2015 diff hist +1,918 GotCloud: FAQs →Compiling FAQs
- 15:38, 26 February 2015 diff hist 0 GotCloud: FAQs →Compiling FAQs
- 15:38, 26 February 2015 diff hist +1,276 GotCloud: FAQs →Compiling FAQs
- 15:30, 26 February 2015 diff hist +528 GotCloud: FAQs →Version Problems
- 14:15, 26 February 2015 diff hist +1 Releasing GotCloud
- 14:14, 26 February 2015 diff hist +539 Releasing GotCloud
- 13:58, 26 February 2015 diff hist +101 GotCloud: Versions
- 13:48, 26 February 2015 diff hist +1,058 GotCloud: Versions →Version 1.16 (Full Release on 2/25/2015)
- 13:18, 26 February 2015 diff hist +81 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 13:11, 26 February 2015 diff hist +329 GotCloud: Alignment Pipeline →Recommended Settings
- 17:39, 25 February 2015 diff hist +65 GotCloud: Versions
- 17:28, 25 February 2015 diff hist -468 Releasing GotCloud
- 17:03, 25 February 2015 diff hist +1 GotCloud →UMich Development/Release How-To Notes
- 17:03, 25 February 2015 diff hist +32 N Creating Packages Mktrost moved page Creating Packages to Releasing GotCloud current
- 17:03, 25 February 2015 diff hist 0 m Releasing GotCloud Mktrost moved page Creating Packages to Releasing GotCloud
- 10:53, 24 February 2015 diff hist +203 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 13:13, 23 February 2015 diff hist +18 GotCloud →UMich Development/Release How-To Notes
- 13:11, 23 February 2015 diff hist +27 GotCloud →UMich Development/Release How-To Notes
- 09:13, 23 February 2015 diff hist +53 QPLOT →Parameters
- 09:11, 23 February 2015 diff hist +10 QPLOT →Parameters
- 11:27, 20 February 2015 diff hist +88 GotCloud: Creating a New Pipeline
- 11:25, 20 February 2015 diff hist +132 N GotCloud: Creating a New Pipeline Created page with "== Creating a New BAM Processing Pipeline == GotCloud allows you to configure new basic BAM processing pipelines via configuration."
- 11:17, 20 February 2015 diff hist -3 BamUtil →Full Release (includes libStatGen)
- 11:16, 20 February 2015 diff hist 0 N File:BamUtilLibStatGen.1.0.13.tgz current
- 11:12, 20 February 2015 diff hist +339 BamUtil →Full Release (includes libStatGen)
- 10:43, 20 February 2015 diff hist +741 BamUtil →Release of just BamUtil (does not include libStatGen)
- 10:06, 20 February 2015 diff hist +1,029 LibStatGen Download →Official Releases
- 15:20, 19 February 2015 diff hist -405 LibStatGen Troubleshooting →Possible Compile Errors
- 15:06, 19 February 2015 diff hist 0 C++ Library: libStatGen
- 13:57, 11 February 2015 diff hist +4 GotCloud: Variant Calling Options →Chromosome X Calling current
- 17:47, 10 February 2015 diff hist +2,006 GotCloud: GenomeSTRiP Pipeline →Configuration File current
- 17:18, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Analysis Region Options
- 16:13, 10 February 2015 diff hist +3,346 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 15:46, 10 February 2015 diff hist +311 GotCloud: GenomeSTRiP Pipeline →BAM List File
- 15:46, 10 February 2015 diff hist +66 GotCloud: Variant Calling Pipeline →BAM List File
- 15:45, 10 February 2015 diff hist +299 GotCloud: Variant Calling Pipeline →BAM List File
- 15:42, 10 February 2015 diff hist +1,928 GotCloud: GenomeSTRiP Pipeline →Input Data
- 14:03, 10 February 2015 diff hist +700 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 13:18, 10 February 2015 diff hist -28 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 12:03, 10 February 2015 diff hist +41 GotCloud: GenomeSTRiP Pipeline →Genotyping Pipeline
- 12:02, 10 February 2015 diff hist +50 GotCloud: GenomeSTRiP Pipeline →Discovery Pipeline
- 12:02, 10 February 2015 diff hist +886 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 11:49, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Metadata Pipeline
- 17:36, 9 February 2015 diff hist +1,592 GotCloud: GenomeSTRiP Pipeline
- 17:15, 9 February 2015 diff hist +3,007 N GotCloud: GenomeSTRiP Pipeline Created page with "Back to parent: GotCloud == GenomeSTRiP == GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics:..."
- 11:44, 6 February 2015 diff hist -1 Screen Commands current
- 11:44, 6 February 2015 diff hist +215 Screen Commands
- 09:39, 19 January 2015 diff hist +911 GotCloud: FAQs →Variant Calling Pipeline FAQs
- 13:42, 13 January 2015 diff hist +180 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 10:39, 7 January 2015 diff hist +189 GotCloud: Alignment Pipeline →Configuration File
- 13:40, 5 January 2015 diff hist -4 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 11:17, 18 December 2014 diff hist +313 SeqShop: December 2014 current
- 17:08, 17 December 2014 diff hist +22 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:02, 17 December 2014 diff hist +11 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 17:02, 17 December 2014 diff hist -3 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 16:57, 17 December 2014 diff hist -1 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 16:56, 17 December 2014 diff hist 0 File:Single.epacts.qq.png Mktrost uploaded a new version of "File:Single.epacts.qq.png" current
- 16:53, 17 December 2014 diff hist +2 SeqShop: Genetic Association Analysis Practical, December 2014 →Single Variant Association Analysis
- 16:43, 17 December 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, December 2014
- 16:43, 17 December 2014 diff hist -64 SeqShop: Genetic Association Analysis Practical, December 2014 →Return to Ancestry on your own genome
- 16:42, 17 December 2014 diff hist +53 SeqShop: Genetic Association Analysis Practical, December 2014 →Introduction
- 16:26, 17 December 2014 diff hist +18 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:25, 17 December 2014 diff hist +66 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:23, 17 December 2014 diff hist -2 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:21, 17 December 2014 diff hist +64 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:14, 17 December 2014 diff hist -64 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:13, 17 December 2014 diff hist -13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 16:12, 17 December 2014 diff hist +13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 16:10, 17 December 2014 diff hist +53 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Introduction
- 16:10, 17 December 2014 diff hist -44 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Restarting SNP Call on your own Genome
- 16:09, 17 December 2014 diff hist +99 SeqShop: Analysis of Structural Variation Practical, December 2014 →What does a real SV look like? current
- 16:09, 17 December 2014 diff hist +99 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Normalization current
- 16:09, 17 December 2014 diff hist +99 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →What is GotCloud snpcall doing?
- 16:09, 17 December 2014 diff hist +98 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 16:08, 17 December 2014 diff hist -139 SeqShop: Analysis of Structural Variation Practical, December 2014 →Starting SNP Call on your own Genome
- 15:35, 17 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →How many variants are filtered out?
- 15:17, 17 December 2014 diff hist +13 SeqShop: Analysis of Structural Variation Practical, December 2014
- 15:15, 17 December 2014 diff hist +14 SeqShop: Analysis of Structural Variation Practical, December 2014 →Introduction
- 15:09, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
