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Jump to navigationJump to search- 11:03, 4 August 2010 diff hist +261 CigarRoller Proposed Update →How would this be used by SamRecord
- 11:00, 4 August 2010 diff hist +634 CigarRoller Proposed Update
- 10:52, 4 August 2010 diff hist +3,995 N CigarRoller Proposed Update Created page with '* Should we rename CigarRoller to Cigar? * Should we be consistent in upper-case vs lower-case first letter of method names? * Should Cigar require a start position? ** I would l…'
- 16:39, 3 August 2010 diff hist +211 C++ Class: CigarRoller
- 16:36, 3 August 2010 diff hist +1,449 C++ Class: CigarRoller
- 13:19, 3 August 2010 diff hist +983 C++ Class: CigarRoller
- 12:49, 3 August 2010 diff hist +14 BAM Review Action Items
- 12:47, 3 August 2010 diff hist +206 C++ Class: SamFile
- 11:51, 3 August 2010 diff hist +1,016 C++ Class: CigarRoller →Mapping Between Reference and Read/Query
- 11:39, 3 August 2010 diff hist +997 C++ Class: CigarRoller
- 11:22, 3 August 2010 diff hist +428 C++ Library: general Change Log
- 12:27, 2 August 2010 diff hist +2,075 N C++ Class Averages Created page with '<source lang="cpp"> // Static method that returns the mean, meadian, and mode for this dataset. void Average::calculateAverages(double& mean, doub…' current
- 11:37, 2 August 2010 diff hist +358 C++ Class: CigarRoller
- 11:33, 2 August 2010 diff hist +84 SAM/BAM Classes FAQs
- 11:32, 2 August 2010 diff hist +63 SAM/BAM Classes FAQs
- 10:44, 2 August 2010 diff hist +134 SAM/BAM Classes FAQs
- 10:42, 2 August 2010 diff hist +4,961 Sam Library Usage Examples
- 17:55, 30 July 2010 diff hist +1 Introduction to new students →Data File Formats
- 17:54, 30 July 2010 diff hist +165 Introduction to new students →Data File Formats
- 17:53, 30 July 2010 diff hist +45 Introduction to new students →Data File Formats
- 17:52, 30 July 2010 diff hist +92 Introduction to new students →Data File Formats
- 17:50, 30 July 2010 diff hist +96 Introduction to new students →Resources
- 17:39, 30 July 2010 diff hist +3,335 SAM
- 16:26, 30 July 2010 diff hist +403 SAM
- 13:43, 30 July 2010 diff hist -122 SAM
- 13:38, 30 July 2010 diff hist +38 SAM
- 13:34, 30 July 2010 diff hist +313 SAM
- 13:12, 30 July 2010 diff hist +118 SAM
- 11:48, 30 July 2010 diff hist +647 SAM
- 11:05, 30 July 2010 diff hist 0 SAM
- 11:05, 30 July 2010 diff hist +96 SAM
- 17:49, 29 July 2010 diff hist +1,063 SAM/BAM Classes FAQs
- 17:35, 29 July 2010 diff hist +4 C++ Class: SamFile
- 17:26, 29 July 2010 diff hist +8 SAM/BAM Classes FAQs
- 17:25, 29 July 2010 diff hist +6 SAM/BAM Classes FAQs
- 17:23, 29 July 2010 diff hist +339 N SAM/BAM Classes FAQs Created page with '== How Do I? == * Map between a query/read sequence and a reference sequence to do things like looking up a base/quality at a given reference position or looking up a reference …'
- 17:18, 29 July 2010 diff hist +37 LibStatGen: BAM
- 17:16, 29 July 2010 diff hist +1,593 C++ Class: CigarRoller
- 14:34, 29 July 2010 diff hist -1 SAM →What Information Does SAM/BAM Have for an Alignment
- 14:32, 29 July 2010 diff hist -1 SAM
- 14:32, 29 July 2010 diff hist +1,394 SAM
- 14:13, 29 July 2010 diff hist +142 SAM
- 13:31, 29 July 2010 diff hist +475 SAM
- 11:51, 29 July 2010 diff hist +2,359 SAM
- 11:15, 29 July 2010 diff hist +2,373 SAM
- 16:17, 28 July 2010 diff hist +18 BamUtil
- 16:17, 28 July 2010 diff hist +18 BamUtil →readIndexedBam
- 16:17, 28 July 2010 diff hist +832 BamUtil
- 14:49, 23 July 2010 diff hist +117 Software →Validators
- 11:24, 22 July 2010 diff hist -6 BamUtil: validate
- 11:23, 22 July 2010 diff hist +29 N File:Bam.0.0.2.tgz BAM Validator Initial Release current
- 11:14, 22 July 2010 diff hist +84 BamUtil: validate
- 11:13, 22 July 2010 diff hist -83 BamUtil: validate
- 11:04, 22 July 2010 diff hist +1 BamUtil: validate →Download
- 11:04, 22 July 2010 diff hist +82 BamUtil: validate →Download
- 11:00, 22 July 2010 diff hist +6 BamUtil: validate
- 10:42, 22 July 2010 diff hist +63 BamUtil: validate →Status
- 10:41, 22 July 2010 diff hist +72 BamUtil: validate →Status
- 10:41, 22 July 2010 diff hist -2,197 BamUtil →validate
- 10:40, 22 July 2010 diff hist +34 LibStatGen: BAM →Executable
- 10:00, 22 July 2010 diff hist +27 BamUtil: validate
- 09:59, 22 July 2010 diff hist +2 BamUtil: validate
- 09:58, 22 July 2010 diff hist +284 BamUtil: validate
- 18:27, 21 July 2010 diff hist 0 BamUtil: validate
- 18:26, 21 July 2010 diff hist +8,720 N BamUtil: validate Created page with 'BamValidator == Status == The initial version of a SAM/BAM Validator is complete. It can be found at: http://www.sph.umich.edu/csg/mktrost/bam/ == Purpos…'
- 17:36, 21 July 2010 diff hist +5 SAM Validation Criteria
- 17:36, 21 July 2010 diff hist +144 SAM Validation Criteria
- 17:25, 21 July 2010 diff hist +18 Main Page →Sequence Analysis Tools
- 17:09, 21 July 2010 diff hist +6 SAM Validation Criteria
- 15:37, 21 July 2010 diff hist +192 SAM Validation Criteria
- 15:35, 21 July 2010 diff hist +9 SAM Validation Criteria
- 12:29, 20 July 2010 diff hist +68 SAM Validation Criteria →SAM Alignment Validation
- 12:23, 20 July 2010 diff hist +1,420 SAM Validation Criteria →SAM Header Validation Rules
- 12:46, 16 July 2010 diff hist +295 C++ Library: general Change Log
- 19:05, 14 July 2010 diff hist +188 C++ Class: SamFile
- 17:32, 14 July 2010 diff hist +1,376 C++ Class: SamFile
- 15:57, 14 July 2010 diff hist +6 LibStatGen: BAM
- 11:25, 14 July 2010 diff hist +448 BamUtil →validate
- 14:27, 2 July 2010 diff hist +164 C++ Class: SamFileHeader
- 14:16, 2 July 2010 diff hist +333 C++ Class: SamFileHeader
- 07:45, 2 July 2010 diff hist +3 C++ Class: SamFileHeader
- 14:00, 1 July 2010 diff hist +124 C++ Class: SamFileHeader
- 11:48, 1 July 2010 diff hist +1,626 C++ Class: SamFileHeader
- 15:39, 30 June 2010 diff hist +1,777 BamUtil
- 15:21, 30 June 2010 diff hist +300 BamUtil
- 14:10, 30 June 2010 diff hist -14 BamUtil
- 12:01, 30 June 2010 diff hist -83 BamUtil →bam Executable
- 11:28, 30 June 2010 diff hist +188 BamUtil
- 11:25, 30 June 2010 diff hist +565 C++ Class: SamFile
- 18:05, 23 June 2010 diff hist -975 C++ Class: InputFile
- 18:03, 23 June 2010 diff hist +854 C++ Library: general Change Log
- 17:42, 14 June 2010 diff hist +2,259 BamUtil
- 17:01, 10 June 2010 diff hist +1,541 C++ Class: SamFile
- 16:47, 10 June 2010 diff hist +19 Sam Library Usage Examples
- 16:47, 10 June 2010 diff hist +88 Sam Library Usage Examples
- 16:43, 10 June 2010 diff hist +90 BAM Review Action Items
- 15:26, 10 June 2010 diff hist +16 BAM Review Action Items
- 14:52, 10 June 2010 diff hist +32 BAM Review Action Items
- 14:51, 10 June 2010 diff hist +128 BAM Review Action Items
- 14:51, 10 June 2010 diff hist +37 Sam Library Usage Examples