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Jump to navigationJump to search- 18:29, 1 November 2010 diff hist +10 BamUtil: mergeBam
- 18:29, 1 November 2010 diff hist -65 BamUtil: mergeBam
- 18:29, 1 November 2010 diff hist +359 BamUtil: mergeBam
- 18:05, 1 November 2010 diff hist -1 BamUtil: mergeBam
- 17:42, 1 November 2010 diff hist +70 BamUtil: mergeBam
- 17:40, 1 November 2010 diff hist +796 N BamUtil: mergeBam Created page with ' rgMergeBam merges multiple sorted BAM files into one BAM file like 'samtools merge' command, but merges BAM headers. * Checks that the HD and SQ tags are identical across the BA…'
- 17:34, 1 November 2010 diff hist +2,840 N Pileup Created page with ' Features: # Option to include a VCF file to select chromosome locations of interest #* Input VCF file can be gzipped or plain text. #*The output VCF file when an input VCF file …'
- 16:21, 1 November 2010 diff hist +3,542 BamUtil: polishBam
- 15:21, 29 October 2010 diff hist -56 BamUtil: polishBam
- 14:47, 29 October 2010 diff hist -52 BamUtil: polishBam
- 14:46, 29 October 2010 diff hist +379 BamUtil: polishBam
- 14:42, 29 October 2010 diff hist +917 N BamUtil: polishBam Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
- 14:40, 29 October 2010 diff hist +40 N Category:BAM Software Created page with 'Software tools that work with BAM files.'
- 14:40, 29 October 2010 diff hist +26 BamUtil: trimBam
- 14:40, 29 October 2010 diff hist +86 N Category:StatGen Download Created page with 'These are the tools and library classes that are downloaded with the statgen download.' current
- 14:39, 29 October 2010 diff hist +24 BamUtil: trimBam
- 14:38, 29 October 2010 diff hist +867 N BamUtil: trimBam Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
- 13:33, 29 October 2010 diff hist 0 C++ Library: libStatGen
- 13:33, 29 October 2010 diff hist +843 C++ Library: libStatGen
- 19:10, 25 October 2010 diff hist +42 N C++ Library: libStatGen Created page with 'To use the StatGenLibrary, first download:'
- 12:02, 25 October 2010 diff hist +207 FastQValidator
- 11:47, 25 October 2010 diff hist +35 N C++ Library: libfqf moved C++ Library: libfqf to StatGenLibrary: FASTQ current
- 11:47, 25 October 2010 diff hist 0 m LibStatGen: FASTQ moved C++ Library: libfqf to StatGenLibrary: FASTQ
- 11:42, 25 October 2010 diff hist +33 N C++ Library: libbam moved C++ Library: libbam to StatGenLibrary: BAM current
- 11:42, 25 October 2010 diff hist 0 m LibStatGen: BAM moved C++ Library: libbam to StatGenLibrary: BAM
- 13:01, 13 October 2010 diff hist -136 BamUtil: filter
- 13:00, 13 October 2010 diff hist -643 BamUtil
- 12:58, 13 October 2010 diff hist -721 BamUtil: validate
- 12:57, 13 October 2010 diff hist +520 BamUtil
- 12:15, 11 October 2010 diff hist -1 C++ Class: CigarRoller →Cigar
- 11:58, 8 October 2010 diff hist -3,136 Sam Library Usage Examples
- 17:29, 30 September 2010 diff hist +2,583 BamUtil: filter
- 17:11, 30 September 2010 diff hist +1,364 BamUtil: filter
- 16:30, 30 September 2010 diff hist +129 BamUtil: filter
- 16:29, 30 September 2010 diff hist +575 BamUtil: filter
- 16:24, 30 September 2010 diff hist +698 BamUtil: filter
- 15:58, 30 September 2010 diff hist +408 BamUtil: filter
- 15:55, 30 September 2010 diff hist +637 BamUtil: filter
- 15:51, 30 September 2010 diff hist +1,175 BamUtil: filter
- 15:18, 30 September 2010 diff hist +1,247 N BamUtil: filter Created page with 'Category:libbam == filter == The <code>filter</code> option on the bam executable writes the alignments filtering them by clipping ends with too high of a mismatch …'
- 15:15, 30 September 2010 diff hist +585 BamUtil
- 15:05, 30 September 2010 diff hist +271 BamUtil
- 15:01, 30 September 2010 diff hist +1,033 BamUtil
- 11:34, 30 September 2010 diff hist +100 BamUtil
- 18:52, 29 September 2010 diff hist +39 LibStatGen: BAM
- 18:44, 29 September 2010 diff hist +147 N Category:C++ Created page with 'If you create a page for C++ software, add <pre>Category:C++</pre> to the bottom of the page so that it will automatically be included here.' current
- 18:37, 29 September 2010 diff hist +129 C++ Class: CigarRoller →Public Methods
- 18:36, 29 September 2010 diff hist +11 C++ Class: CigarRoller →Public Methods
- 18:35, 29 September 2010 diff hist +135 C++ Class: CigarRoller →Public Methods
- 18:08, 29 September 2010 diff hist +14 C++ Class: CigarRoller →static Methods
- 18:08, 29 September 2010 diff hist +568 C++ Class: CigarRoller
- 18:05, 29 September 2010 diff hist +3 C++ Class: CigarRoller →Public Methods
- 18:04, 29 September 2010 diff hist +151 C++ Class: CigarRoller →Public Methods
- 18:03, 29 September 2010 diff hist +147 LibStatGen: general
- 17:50, 29 September 2010 diff hist -22 C++ Class: InputFile
- 17:50, 29 September 2010 diff hist -22 C++ Class: CigarRoller
- 17:48, 29 September 2010 diff hist +156 N Category:Libcsg Created page with 'If you create a page for software in libcsg, add <pre>Category:libcsg</pre> to the bottom of the page so that it will automatically be included here.' current
- 17:47, 29 September 2010 diff hist +61 C++ Class: CigarRoller
- 17:46, 29 September 2010 diff hist +61 LibStatGen: general
- 17:45, 29 September 2010 diff hist +60 C++ Class: InputFile
- 17:44, 29 September 2010 diff hist +978 C++ Library: general Change Log
- 17:28, 29 September 2010 diff hist +201 C++ Class: InputFile
- 17:26, 29 September 2010 diff hist +434 C++ Class: InputFile →Example
- 17:21, 29 September 2010 diff hist +2,197 C++ Class: InputFile
- 16:12, 29 September 2010 diff hist +27 C++ Class: InputFile →InputFile / IFILE
- 17:25, 21 September 2010 diff hist +346 SAM: Filtering Reads current
- 17:20, 21 September 2010 diff hist +3,316 N SAM: Filtering Reads Created page with 'Two filters have been requested for updating a SAM/BAM File. A program should be written that will run both at the same time and produce an updated SAM/BAM File. # Sum the qual…'
- 14:55, 20 September 2010 diff hist +32 BAM Review Action Items →Notes
- 14:45, 20 September 2010 diff hist +92 BAM Review Action Items
- 14:25, 20 September 2010 diff hist +319 BAM Review Action Items →Accessing String Values
- 14:10, 20 September 2010 diff hist +38 BAM Review Action Items
- 15:42, 17 September 2010 diff hist +156 BAM Review Action Items →NOTES From Meeting
- 15:30, 17 September 2010 diff hist -23 BAM Review Action Items
- 13:43, 17 September 2010 diff hist +251 BAM Review Action Items
- 13:00, 17 September 2010 diff hist +382 BAM Review Action Items →Accessing String Values
- 12:42, 17 September 2010 diff hist +313 BAM Review Action Items
- 12:32, 17 September 2010 diff hist -1 BamUtil →Usage
- 12:27, 17 September 2010 diff hist +93 BAM Review Action Items →Review Sept 17th
- 12:17, 17 September 2010 diff hist +1 BAM Review Action Items
- 10:16, 17 September 2010 diff hist +3,889 BAM Review Action Items
- 09:50, 17 September 2010 diff hist +200 BAM Review Action Items
- 09:43, 17 September 2010 diff hist +37 BAM Review Action Items
- 09:43, 17 September 2010 diff hist +1,684 BAM Review Action Items
- 08:36, 17 September 2010 diff hist +52 BAM Review Action Items
- 15:51, 27 August 2010 diff hist +258 SAM Validation Criteria current
- 10:38, 26 August 2010 diff hist +70 C++ Class: SamFile →Statistic Generation
- 17:22, 23 August 2010 diff hist +293 C++ Class: SamFile
- 17:20, 23 August 2010 diff hist -1 C++ Class: SamFile
- 17:19, 23 August 2010 diff hist +336 C++ Class: SamFile →Statistic Generation
- 17:00, 23 August 2010 diff hist +183 BamUtil: validate
- 16:59, 23 August 2010 diff hist +69 C++ Class: SamFile →Statistics
- 14:34, 23 August 2010 diff hist -2,504 BamUtil: validate
- 14:33, 23 August 2010 diff hist +2,597 C++ Class: SamFile
- 09:00, 11 August 2010 diff hist +1,620 C++ Class: CigarRoller
- 08:39, 11 August 2010 diff hist -12 SAM/BAM Classes FAQs
- 08:38, 11 August 2010 diff hist +307 C++ Library: general Change Log
- 08:35, 11 August 2010 diff hist +307 C++ Class: SamRecord
- 08:32, 11 August 2010 diff hist +668 C++ Class: SamRecord
- 08:19, 11 August 2010 diff hist +378 C++ Class: SamFile
- 11:11, 4 August 2010 diff hist +70 CigarRoller Proposed Update current