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Jump to navigationJump to search- 12:22, 27 January 2012 diff hist +453 Software →Programs/Tools: add asp
- 12:14, 27 January 2012 diff hist -58 C++ Library: libStatGen →Library Documentation
- 12:13, 27 January 2012 diff hist +123 LibStatGen: ASP
- 11:45, 27 January 2012 diff hist +2,421 LibStatGen: ASP
- 23:42, 26 January 2012 diff hist +1,591 LibStatGen: ASP
- 18:07, 26 January 2012 diff hist +1,418 LibStatGen: ASP
- 11:27, 26 January 2012 diff hist -9 BamUtil: stats →Summary of per Position Statistics (--baseSum)
- 11:27, 26 January 2012 diff hist +14 BamUtil: stats →Sample Output
- 18:29, 25 January 2012 diff hist +43 LibStatGen: ASP
- 18:28, 25 January 2012 diff hist +999 LibStatGen: ASP
- 18:05, 25 January 2012 diff hist +6,495 LibStatGen: ASP
- 15:23, 25 January 2012 diff hist +1,332 N LibStatGen: ASP Created page with 'Category:C++ Category:libStatGen Category:libStatGen ASP = Asymmetric Pileup (ASP) = Asymmetric Pileup (ASP) is a new pileup file format that we created to replace …'
- 14:56, 25 January 2012 diff hist +140 C++ Library: libStatGen →Library Documentation
- 12:33, 23 January 2012 diff hist -1 BamUtil: stats →Count-Based Output Format (--pBaseQC)
- 19:44, 19 January 2012 diff hist +2 BamUtil: stats
- 19:43, 19 January 2012 diff hist +4,065 BamUtil: stats
- 12:30, 18 January 2012 diff hist 0 Installing MinGW & MSYS on Windows current
- 12:29, 18 January 2012 diff hist +18 FTEC →Windows with MinGW
- 12:28, 18 January 2012 diff hist +48 N Installing MinGW/MSYS on Windows moved Installing MinGW/MSYS on Windows to Installing MinGW & MSYS on Windows current
- 12:28, 18 January 2012 diff hist 0 m Installing MinGW & MSYS on Windows moved Installing MinGW/MSYS on Windows to Installing MinGW & MSYS on Windows
- 12:28, 18 January 2012 diff hist +304 Installing MinGW & MSYS on Windows
- 12:23, 18 January 2012 diff hist +155 Installing MinGW & MSYS on Windows
- 12:07, 18 January 2012 diff hist +5,648 N Installing MinGW & MSYS on Windows Created page with '= Installing MSYS/MinGW = Further help can be found at: *http://www.mingw.org/wiki/HOWTO_Install_the_MinGW_GCC_Compiler_Suite *http://www.mingw.org/wiki/MSYS '''Install MinGW be…'
- 10:24, 17 January 2012 diff hist +1 Template:ToolGitRepo
- 22:20, 16 January 2012 diff hist +69 QPLOT
- 22:19, 16 January 2012 diff hist +17 Template:ToolGitRepo
- 21:26, 16 January 2012 diff hist +234 Nm User talk:Xiangtao Liu Welcome! current
- 21:26, 16 January 2012 diff hist +425 Nm User:Xiangtao Liu Creating user page with biography of new user. current
- 21:12, 16 January 2012 diff hist +18 Software →Programs/Tools
- 17:47, 16 January 2012 diff hist +10 BamUtil →Programs
- 17:47, 16 January 2012 diff hist +31 N SplitBam moved SplitBam to BamUtil: splitBam: Now part of BamUtil current
- 17:47, 16 January 2012 diff hist 0 m BamUtil: splitBam moved SplitBam to BamUtil: splitBam: Now part of BamUtil
- 17:45, 16 January 2012 diff hist +65 BamUtil
- 17:44, 16 January 2012 diff hist +173 BamUtil: splitBam Add SplitBam to Bamutil
- 17:49, 22 December 2011 diff hist +1,892 N BamUtil: indelDiscordance Created page with 'clipOverlap Category:BAM Software Category:Software = Overview of the <code>indelDiscordance</code> function of <code>bamUtil</code> = The <code>ind…'
- 15:46, 22 December 2011 diff hist +150 N Template:RefFile add refFile
- 15:44, 22 December 2011 diff hist +253 N Template:BamIndex add bamIndex
- 15:56, 28 November 2011 diff hist +242 StatsTools
- 15:48, 28 November 2011 diff hist +2,325 StatsTools
- 15:22, 28 November 2011 diff hist +2,003 N StatsTools Created page with '= <code>statsTools</code> Overview = <code>statsTools</code> contains a set of tools for operating on the statistics files that we generate. Currently it only works on baseQC st…'
- 14:17, 21 November 2011 diff hist +122 BamUtil: revert
- 09:57, 21 November 2011 diff hist +6 BamUtil: clipOverlap Update default poolSize
- 16:51, 18 November 2011 diff hist +1,078 BamUtil: clipOverlap Update output
- 14:52, 18 November 2011 diff hist +1,110 BamUtil: clipOverlap Update clipOverlap
- 13:01, 15 November 2011 diff hist +450 BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil: add clipping logic
- 12:47, 15 November 2011 diff hist +91 Software →Update the File: add clipOverlap
- 12:45, 15 November 2011 diff hist +97 BamUtil add clipOverlap
- 12:07, 15 November 2011 diff hist -2 m BamUtil: clipOverlap
- 12:06, 15 November 2011 diff hist +138 N Template:ParamsParameter Created page with '== Print the Program Parameters (<code>--params</code>) == Use <code>--params</code> to print the parameters for your program to stderr.'
- 12:05, 15 November 2011 diff hist +213 N Template:NoeofBGZFParameter Created page with '== Do not require BGZF EOF block (<code>--noeof</code>) == Use <code>--noeof</code> if you do not expect a trailing eof block in your bgzf file. By default, the trailing empty…'
- 12:04, 15 November 2011 diff hist +1 BamUtil: clipOverlap
- 11:58, 15 November 2011 diff hist +3,079 BamUtil: clipOverlap
- 12:14, 14 November 2011 diff hist -2 BamUtil: clipOverlap →Clipping from the back
- 12:11, 14 November 2011 diff hist +454 BamUtil: clipOverlap
- 16:20, 28 October 2011 diff hist +745 BamUtil: clipOverlap
- 16:10, 28 October 2011 diff hist +1,673 N BamUtil: clipOverlap Created page with 'clipOverlap Category:BAM Software Category:Software = Overview of the <code>clipOverlap</code> function of <code>bamUtil</code> = The <code>clipOver…'
- 13:17, 20 October 2011 diff hist +15 BamUtil →Programs
- 16:39, 12 October 2011 diff hist +90 Software add email address
- 18:06, 10 October 2011 diff hist +2,330 BamUtil Add release downloads
- 18:04, 10 October 2011 diff hist 0 N File:BamUtil.1.0.0.tgz current
- 17:42, 10 October 2011 diff hist +43 N File:BamUtilLibStatGen.1.0.0.tgz BamUtil first release containing libStatGen current
- 17:42, 10 October 2011 diff hist -3,945 LibStatGen Download Update with first release
- 17:36, 10 October 2011 diff hist +30 N File:LibStatGen.1.0.0.tgz Initial version of the library current
- 17:35, 7 October 2011 diff hist +328 BamUtil: squeeze Update usage and start adding parameters
- 17:20, 7 October 2011 diff hist +17 BamUtil: stats Q20Pct also excludes Mapping Quality 255
- 17:20, 7 October 2011 diff hist +68 BamUtil: stats depth and q20 exclude mapping quality 255
- 16:41, 7 October 2011 diff hist -23 BamUtil: stats Update usage
- 16:14, 7 October 2011 diff hist +282 BamUtil: stats add that deletions/skips are excluded from depth/q20 bases
- 15:51, 7 October 2011 diff hist +89 BamUtil: stats
- 14:52, 7 October 2011 diff hist +100 BamUtil: stats Add links to output format
- 14:47, 7 October 2011 diff hist +1,729 BamUtil: stats Update Stats
- 11:57, 7 October 2011 diff hist +38 BamUtil: stats Update BaseQC outputs
- 09:26, 7 October 2011 diff hist -1,805 BamUtil: convert Use templates for --in and --out
- 09:26, 7 October 2011 diff hist +911 N Template:OutBAMOutputFile --out BAM Output File
- 09:25, 7 October 2011 diff hist +932 N Template:InBAMInputFile --in BAM InputFile Template
- 08:50, 7 October 2011 diff hist +3 BamUtil: convert Relocate Usage
- 17:44, 6 October 2011 diff hist +135 BamUtil: convert Update reference to file recovery
- 17:40, 6 October 2011 diff hist +81 BamUtil: convert Update Seq Representation descripiton
- 17:38, 6 October 2011 diff hist +1,958 BamUtil: convert Add --in/--out sections
- 14:07, 6 October 2011 diff hist -1 BamUtil: convert
- 14:07, 6 October 2011 diff hist +12 BamUtil: convert →Usage
- 14:05, 6 October 2011 diff hist +84 Software →Rewrite SAM/BAM file: Add BAM recovery
- 12:52, 6 October 2011 diff hist +109 C++ Library: libStatGen
- 10:34, 29 September 2011 diff hist +1,099 BamUtil: dumpRefInfo
- 10:26, 29 September 2011 diff hist -1 BamUtil: stats →Output Format =
- 10:26, 29 September 2011 diff hist +1,235 BamUtil: stats Add output description
- 13:19, 27 September 2011 diff hist -1 BamUtil: squeeze →Parameters: Fix typo in usage
- 16:06, 22 September 2011 diff hist +1,677 BamUtil: stats →BaseQC: Add average mapping quality stats
- 13:17, 22 September 2011 diff hist -99 BamUtil: stats →BaseQC
- 17:19, 9 September 2011 diff hist +22 N Git How To moved Git How To to Git FAQs current
- 17:19, 9 September 2011 diff hist 0 m Git FAQs moved Git How To to Git FAQs
- 17:18, 9 September 2011 diff hist +1,561 Git FAQs Update FAQs
- 17:02, 9 September 2011 diff hist +145 Git FAQs →Create a remote bare Git repository for a repository to push to/pull from
- 16:59, 9 September 2011 diff hist +109 Git FAQs →Check Branches
- 16:58, 9 September 2011 diff hist +443 How To Use Git current
- 16:52, 9 September 2011 diff hist +5,600 Git FAQs
- 16:15, 9 September 2011 diff hist -2,503 How To Use Git
- 14:50, 9 September 2011 diff hist +1,924 How To Use Git →How Do I...
- 14:49, 9 September 2011 diff hist +24 N Turn an already existing directory into a Git Repository moved Turn an already existing directory into a Git Repository to Git How To current
- 14:49, 9 September 2011 diff hist 0 m Git FAQs moved Turn an already existing directory into a Git Repository to Git How To