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Jump to navigationJump to search- 12:10, 22 May 2015 diff hist -12 SeqShop: Calling Your Own Genome, May 2015 →Annotation / Lookup against dbSNP current
- 10:49, 22 May 2015 diff hist +143 SeqShop: Calling Your Own Genome, May 2015 →Friday
- 10:40, 22 May 2015 diff hist +30 SeqShop: May 2015 current
- 10:40, 22 May 2015 diff hist 0 N File:2015.05 - Workshop Closing.pdf current
- 09:44, 22 May 2015 diff hist -304 SeqShop: Calling Your Own Genome, May 2015
- 16:29, 21 May 2015 diff hist +12 SeqShop: Calling Your Own Genome, May 2015 →FEEDBACK!
- 14:57, 21 May 2015 diff hist +18 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry current
- 14:56, 21 May 2015 diff hist +6 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 14:52, 21 May 2015 diff hist +1 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry
- 14:26, 21 May 2015 diff hist +30 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 14:25, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Visualizing Ancestry
- 14:25, 21 May 2015 diff hist +10 SeqShop: Ancestry On Your Own Genome, May 2015 →Estimate ancestry
- 14:24, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 2: pileup --> seq
- 14:24, 21 May 2015 diff hist +6 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 14:22, 21 May 2015 diff hist -34 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 1: bam --> pileup
- 14:15, 21 May 2015 diff hist 0 SeqShop: Association Analysis, May 2015 →Download & Build EPACTS current
- 14:14, 21 May 2015 diff hist +14 SeqShop: Association Analysis, May 2015 →Setup
- 14:13, 21 May 2015 diff hist +218 SeqShop: Association Analysis, May 2015 →Setup
- 14:04, 21 May 2015 diff hist +340 SeqShop: Association Analysis, May 2015
- 10:22, 21 May 2015 diff hist +5 SeqShop: Ancestry On Your Own Genome, May 2015 →Step 1: bam --> pileup
- 09:06, 21 May 2015 diff hist +227 SeqShop: Estimates of Genetic Ancestry Practical, May 2015 →Return to Workshop Wiki Page
- 23:02, 20 May 2015 diff hist -38 SeqShop: May 2015
- 23:01, 20 May 2015 diff hist 0 N File:Stratification.pptx current
- 11:43, 20 May 2015 diff hist +1 SeqShop: May 2015
- 11:43, 20 May 2015 diff hist 0 N File:Seqshop genetic association analysis 150521.pptx current
- 11:23, 20 May 2015 diff hist +84 SeqShop: May 2015
- 11:22, 20 May 2015 diff hist +137 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Return to Workshop Wiki Page current
- 11:19, 20 May 2015 diff hist -1,846 SeqShop: Calling Your Own Genome, May 2015
- 11:11, 20 May 2015 diff hist +39 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 11:09, 20 May 2015 diff hist +4 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 11:09, 20 May 2015 diff hist +12 SeqShop: Ancestry On Your Own Genome, May 2015 →Run
- 11:07, 20 May 2015 diff hist -24 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 10:23, 20 May 2015 diff hist +16 SeqShop: May 2015
- 10:16, 20 May 2015 diff hist 0 N File:2015.05 - Workshop Intro.pdf current
- 10:01, 20 May 2015 diff hist -12 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Setup
- 10:00, 20 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Running GotCloud Indel
- 09:48, 20 May 2015 diff hist -10 SeqShop: May 2015
- 09:48, 20 May 2015 diff hist 0 N File:Seqshop 2015 non-SNP variation.pdf current
- 16:13, 19 May 2015 diff hist -3 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Metadata Pipeline
- 16:08, 19 May 2015 diff hist +33 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 16:08, 19 May 2015 diff hist +60 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 16:07, 19 May 2015 diff hist +112 SeqShop: Analysis of Structural Variation Practical, May 2015 →Reference Files
- 15:37, 19 May 2015 diff hist +66 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Genotype Refinement Output
- 15:05, 19 May 2015 diff hist -1,533 SeqShop: Association Analysis, May 2015
- 14:58, 19 May 2015 diff hist -2,032 SeqShop: Estimates of Genetic Ancestry Practical, May 2015
- 14:03, 19 May 2015 diff hist -901 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Comparison with other data sets
- 14:02, 19 May 2015 diff hist +258 Nm User talk:Carol Yuan Welcome! current
- 14:02, 19 May 2015 diff hist +218 Nm User:Carol Yuan Creating user page for new user. current
- 13:42, 19 May 2015 diff hist -1 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Setup
- 13:42, 19 May 2015 diff hist +31 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Setup
- 12:26, 19 May 2015 diff hist -715 SeqShop: Ancestry On Your Own Genome, May 2015 →Setup your terminal
- 12:25, 19 May 2015 diff hist +13 SeqShop: Calling Your Own Genome, May 2015 →Thursday
- 12:23, 19 May 2015 diff hist -652 SeqShop: Calling Your Own Genome, May 2015 →Thursday
- 10:37, 19 May 2015 diff hist -1,137 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
- 09:57, 19 May 2015 diff hist +138 SeqShop: Calling Your Own Genome, May 2015 →Log Out
- 09:56, 19 May 2015 diff hist +14 SeqShop: Calling Your Own Genome, May 2015 →Running INDEL
- 09:54, 19 May 2015 diff hist -47 SeqShop: Calling Your Own Genome, May 2015 →Configuring Indel
- 23:31, 18 May 2015 diff hist +1 SeqShop: Calling Your Own Genome, May 2015 →FEEDBACK!
- 23:31, 18 May 2015 diff hist +140 SeqShop: Calling Your Own Genome, May 2015 →Log Out
- 23:28, 18 May 2015 diff hist -16 SeqShop: Calling Your Own Genome, May 2015 →Wednesday
- 23:27, 18 May 2015 diff hist -8 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline
- 23:25, 18 May 2015 diff hist +25 SeqShop: Calling Your Own Genome, May 2015 →Running SNP Calling
- 23:25, 18 May 2015 diff hist -1,601 SeqShop: Calling Your Own Genome, May 2015 →Start SNP Calling
- 23:19, 18 May 2015 diff hist -3 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Genotyping Pipeline
- 23:18, 18 May 2015 diff hist -41 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline
- 23:11, 18 May 2015 diff hist -13 SeqShop: Analysis of Structural Variation Practical, May 2015 →Setup
- 23:11, 18 May 2015 diff hist +13 SeqShop: Analysis of Structural Variation Practical, May 2015 →Setup
- 23:07, 18 May 2015 diff hist -1,048 SeqShop: Analysis of Structural Variation Practical, May 2015
- 22:59, 18 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Running GotCloud Genotype Refinement
- 22:57, 18 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Run GotCloud SnpCall
- 22:48, 18 May 2015 diff hist +48 SeqShop: Calling Your Own Genome, May 2015 →Setup Variables
- 22:47, 18 May 2015 diff hist 0 SeqShop: Calling Your Own Genome, May 2015
- 22:47, 18 May 2015 diff hist -259 SeqShop: Calling Your Own Genome, May 2015 →Tuesday - Start INDEL Calling
- 22:12, 18 May 2015 diff hist -433 SeqShop: Calling Your Own Genome, May 2015 →Need a BAM Index File?
- 11:34, 18 May 2015 diff hist -68 SeqShop: Aligning Your Own Genome, May 2015 current
- 17:19, 17 May 2015 diff hist -1,185 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
- 17:04, 17 May 2015 diff hist -58 SeqShop: May 2015
- 17:02, 17 May 2015 diff hist 0 N File:Mapping and assembly May2015.pdf current
- 17:02, 17 May 2015 diff hist 0 N File:Analysis of SV May2015.pdf current
- 17:00, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf": Reverted to version as of 13:19, 16 June 2014 current
- 16:58, 17 May 2015 diff hist 0 File:Mapping and assembly.pdf Mktrost uploaded a new version of "File:Mapping and assembly.pdf"
- 16:57, 17 May 2015 diff hist +13 SeqShop: Aligning Your Own Genome, May 2015 →Recalibration Comparison
- 16:56, 17 May 2015 diff hist +1 SeqShop: Aligning Your Own Genome, May 2015
- 16:54, 17 May 2015 diff hist -57 Template:SeqShopLoginSubMachine →Login to the seqshop Machine current
- 16:32, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 16:31, 17 May 2015 diff hist -666 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 16:18, 17 May 2015 diff hist +9 Template:SeqShopLogin current
- 16:18, 17 May 2015 diff hist +419 N Template:SeqShopLoginSubMachine Created page with "=== Login to the seqshop Machine === So you can each run multiple jobs at once, we will have you run on 4 different machines within our seqshop setup. * You can only access th..."
- 16:17, 17 May 2015 diff hist -2,462 Template:SeqShopLogin Replaced content with "{{SeqShopLoginA}} {{SeqShopLoginB}}"
- 16:16, 17 May 2015 diff hist +2,076 N Template:SeqShopLoginA Created page with "=== Login to the seqshop-server Linux Machine === <div class="mw-collapsible" style="width:600px"> '' This section will appear redundantly in each session. If you are already ..." current
- 15:58, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud indel.pdf current
- 15:58, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 →Introduction
- 15:57, 17 May 2015 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Introduction
- 15:57, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud snpcall.pdf current
- 15:35, 17 May 2015 diff hist 0 SeqShop: Aligning Your Own Genome, May 2015 →FEEDBACK!
- 15:25, 17 May 2015 diff hist 0 N File:May2015 SeqShop - GotCloud Align.pdf current
- 15:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Introduction
- 15:24, 17 May 2015 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, May 2015
- 15:21, 17 May 2015 diff hist -5 SeqShop: Sequence Mapping and Assembly Practical Redirected page to SeqShop: Sequence Mapping and Assembly Practical, May 2015 current
- 15:19, 17 May 2015 diff hist 0 File:May2015 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:May2015 SeqShop - Linux.pdf" current