User contributions
22 May 2015
SeqShop: Calling Your Own Genome, May 2015
Annotation / Lookup against dbSNP
-12
SeqShop: Calling Your Own Genome, May 2015
Friday
+143
SeqShop: May 2015
no edit summary
+30
File:2015.05 - Workshop Closing.pdf
no edit summary
SeqShop: Calling Your Own Genome, May 2015
no edit summary
-304
21 May 2015
SeqShop: Calling Your Own Genome, May 2015
FEEDBACK!
+12
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+18
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+6
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+1
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+30
SeqShop: Ancestry On Your Own Genome, May 2015
Visualizing Ancestry
+5
SeqShop: Ancestry On Your Own Genome, May 2015
Estimate ancestry
+10
SeqShop: Ancestry On Your Own Genome, May 2015
Step 2: pileup --> seq
+5
SeqShop: Ancestry On Your Own Genome, May 2015
Setup your terminal
+6
SeqShop: Ancestry On Your Own Genome, May 2015
Step 1: bam --> pileup
-34
SeqShop: Association Analysis, May 2015
Download & Build EPACTS
SeqShop: Association Analysis, May 2015
Setup
+14
SeqShop: Association Analysis, May 2015
Setup
+218
SeqShop: Association Analysis, May 2015
no edit summary
+340
SeqShop: Ancestry On Your Own Genome, May 2015
Step 1: bam --> pileup
+5
SeqShop: Estimates of Genetic Ancestry Practical, May 2015
Return to Workshop Wiki Page
+227
20 May 2015
SeqShop: May 2015
no edit summary
-38
File:Stratification.pptx
no edit summary
SeqShop: May 2015
no edit summary
+1
File:Seqshop genetic association analysis 150521.pptx
no edit summary
SeqShop: May 2015
no edit summary
+84
SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
Return to Workshop Wiki Page
+137
SeqShop: Calling Your Own Genome, May 2015
no edit summary
-1,846
SeqShop: Ancestry On Your Own Genome, May 2015
Setup your terminal
+39
SeqShop: Ancestry On Your Own Genome, May 2015
Setup your terminal
+4
SeqShop: Ancestry On Your Own Genome, May 2015
Run
+12
SeqShop: Ancestry On Your Own Genome, May 2015
Setup your terminal
-24
SeqShop: May 2015
no edit summary
+16
File:2015.05 - Workshop Intro.pdf
no edit summary
SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
Setup
-12
SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
Running GotCloud Indel
SeqShop: May 2015
no edit summary
-10
File:Seqshop 2015 non-SNP variation.pdf
no edit summary
19 May 2015
SeqShop: Analysis of Structural Variation Practical, May 2015
Running GotCloud/GenomeSTRiP Metadata Pipeline
-3
SeqShop: Analysis of Structural Variation Practical, May 2015
Reference Files
+33
SeqShop: Analysis of Structural Variation Practical, May 2015
Reference Files
+60
SeqShop: Analysis of Structural Variation Practical, May 2015
Reference Files
+112
SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
Genotype Refinement Output
+66
SeqShop: Association Analysis, May 2015
no edit summary
-1,533
SeqShop: Estimates of Genetic Ancestry Practical, May 2015
no edit summary
-2,032
SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
Comparison with other data sets
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User talk:Carol Yuan
Welcome!
mUser:Carol Yuan
Creating user page for new user.
mSeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
Setup
-1
SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
Setup
+31
