User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 16:36, 1 March 2017 diff hist +466 Help:Contents current
- 15:29, 1 March 2017 diff hist -53 Minimac
- 15:29, 1 March 2017 diff hist +1 Minimac
- 15:28, 1 March 2017 diff hist +53 Minimac
- 18:37, 26 October 2016 diff hist -1 Abecasis Lab →Staff
- 18:37, 26 October 2016 diff hist 0 N File:Pjvh.jpg current
- 21:46, 28 July 2016 diff hist +24 CSG Tech Talks
- 21:45, 28 July 2016 diff hist 0 N File:Cplusplus11-features-and-tricks.pdf current
- 16:40, 1 April 2016 diff hist +44 Talk:GotCloud current
- 15:24, 12 January 2016 diff hist +12 Talk:GotCloud →Organization of the GotCloud pages on this wiki
- 11:51, 12 January 2016 diff hist +54 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster current
- 02:54, 8 January 2016 diff hist +215 Using Gotcloud on Flux →How to monitor your jobs on Flux
- 02:53, 8 January 2016 diff hist +241 Using Gotcloud on Flux →How to run Gotcloud on Flux
- 02:43, 8 January 2016 diff hist +973 Using Gotcloud on Flux →Running Gotcloud on Flux
- 02:33, 8 January 2016 diff hist +33 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:33, 8 January 2016 diff hist +1 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:32, 8 January 2016 diff hist +766 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:14, 8 January 2016 diff hist -33 Using Gotcloud on Flux →Next, prepare to use the Flux/Torque/PBS cluster
- 02:14, 8 January 2016 diff hist +3,382 N Using Gotcloud on Flux Created page with "__TOC__ ==Running Gotcloud on Flux== ===First, Configure GotCloud like you would anywhere else=== 1. Install GotCloud somewhere as instructed GotCloud#GotCloud_Setup_on_A..."
- 00:25, 8 January 2016 diff hist +40 Talk:GotCloud
- 00:22, 8 January 2016 diff hist -1 Talk:GotCloud →Organization of the GotCloud pages on this wiki
- 00:21, 8 January 2016 diff hist +51 Talk:GotCloud
- 00:19, 8 January 2016 diff hist -626 Talk:GotCloud
- 00:17, 8 January 2016 diff hist +1,287 Talk:GotCloud
- 23:49, 7 January 2016 diff hist +339 Talk:GotCloud
- 23:42, 7 January 2016 diff hist +1,799 N Talk:GotCloud Created page with "==Organization of the GotCloud pages on this wiki== The main page is http://genome.sph.umich.edu/wiki/GotCloud . Setup pages: * http://genome.sph.umich.edu/wiki/GotCloud:_Bi..."
- 23:29, 7 January 2016 diff hist +25 GotCloud: Binary Releases current
- 23:27, 7 January 2016 diff hist +9 GotCloud: Binary Releases →GotCloud Binary Releases
- 23:25, 7 January 2016 diff hist +12 GotCloud: Binary Releases
- 18:09, 15 December 2015 diff hist +16 GotCloud →GotCloud Setup
- 22:17, 6 November 2015 diff hist -124 Releasing GotCloud current
- 01:51, 31 October 2015 diff hist -2 VcfCooker current
- 01:50, 31 October 2015 diff hist +74 VcfCooker add download link
- 03:53, 29 October 2015 diff hist +8 Releasing GotCloud
- 03:40, 29 October 2015 diff hist +36 Releasing GotCloud
- 03:38, 29 October 2015 diff hist -2 Releasing GotCloud
- 03:34, 29 October 2015 diff hist -36 Releasing GotCloud
- 03:29, 29 October 2015 diff hist -2 Releasing GotCloud
- 18:11, 27 October 2015 diff hist +22 BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil: grammar/usage.
- 18:08, 27 October 2015 diff hist -13 m BamUtil: clipOverlap →Overview of the clipOverlap function of bamUtil: Fix broken link.
- 12:55, 2 October 2015 diff hist -65 Talk:SeqShop: Sequence Mapping and Assembly Practical, May 2015 remove idea as impractical because of samtools, tabix, svtoolkit current
- 13:09, 28 September 2015 diff hist +65 N Talk:SeqShop: Sequence Mapping and Assembly Practical, May 2015 Created page with "TODO: put `gotcloud` into the path and remove the variable `$GC`."
- 16:10, 11 September 2015 diff hist +33 m SAM →What Information Does SAM/BAM Have for an Alignment: turn text to link current
- 18:50, 8 September 2015 diff hist 0 Git FAQs →Bring in changes from a subtree's remote: It won't work if you only have the remote but not the branch. current
- 18:04, 1 September 2015 diff hist -18 m Git FAQs →Subtrees: Format code.
- 18:01, 1 September 2015 diff hist +246 Git FAQs →Subtrees: Format instructions for using git subtrees
- 17:43, 1 September 2015 diff hist -77 GotCloud →Running GotCloud Software: Remove broken links. Update pipeline status.
- 14:55, 31 August 2015 diff hist +7 GotCloud: Creating a New Pipeline →Command Line Parameters: fix formatting about BAM_LIST current
- 14:28, 31 August 2015 diff hist 0 m GotCloud: Creating a New Pipeline →Overall Pipeline Definition: spelling
- 13:55, 31 August 2015 diff hist +1 m GotCloud: Amazon matching parenthesis current
- 16:37, 25 August 2015 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, May 2015 →Step 1: bam --> pileup: add # to command line
- 15:56, 25 August 2015 diff hist -173 SeqShop: Analysis of Structural Variation Practical, May 2015 Undo revision 13683 by Pjvh (talk) revert all changes involving `--list bam.list` current
- 18:34, 24 August 2015 diff hist +4 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: split long command line
- 18:31, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP 3rd-party Site Genotyping/Filtering Pipeline: add `--list bams/bam.list` to the 3rd command
- 18:29, 24 August 2015 diff hist +21 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Genotyping Pipeline: add `--list bams/bam.list` to the next gotcloud command
- 18:21, 24 August 2015 diff hist +1 m SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: add missing dash
- 18:19, 24 August 2015 diff hist +127 SeqShop: Analysis of Structural Variation Practical, May 2015 →Running GotCloud/GenomeSTRiP Discovery Pipeline: tell gotcloud where bam.list is, which is now required.
- 22:06, 19 August 2015 diff hist +31 User:Pjvh current
- 22:05, 19 August 2015 diff hist -445 User:Pjvh Blanked the page
- 18:35, 19 August 2015 diff hist +4 SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 →Filtered VCF: since the uncompressed vcf isn't created, use zless on the compressed current
- 15:05, 19 August 2015 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud: update to gotcloud-1.17.4