User contributions
21 February 2017
Thunder
(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
+10
Thunder
(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
-2
Famrvtest
PED and DAT Files
-4
2 February 2017
CalcMatch
Download
-3
MaCH: machX
no edit summary
BAM Review Action Items
Accessing String Values
-3
C++ Class: CigarRoller
Cigar
-4
VcfCodingSnps
no edit summary
-6
TabAnno
Contact
-3
TabAnno
Quick tutorial
-21
UMAKE
Exercise with Example Resources
-3
LASER
Advanced options
-3
QPLOT
Source Code Distribution
-9
QPLOT
Binary Download
-3
CheckVCF.py
Download
-3
Rare variant tests
Summary of rare variant tests for sequence data
-3
SplitRef
Download
-3
SplitPed
Download
-3
SplitPed
Required Input Files
-6
CalcMatch
no edit summary
-6
MaCH: Input Files
Optional Phased Haplotypes
-3
MaCH: Input Files
Optional Phased Haplotypes
-3
MaCH: Input Files
no edit summary
-6
MaCH: machX
Reference Haplotypes
-3
MaCH: machX
Your Own Data
-3
Thunder
Ligate Haplotypes
-3
Thunder
Example Showing the Whole Pipeline
-3
Thunder
(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
-9
Thunder
(step 1) Site promotion using software glfMultiples GPT_Freq
-3
Mach DAC
Post Phasing/Imputation Ligation
-3
Mach DAC
Phasing/Imputation with External Reference
-3
Mach DAC
Split Your Data
-3
MaCH FAQ
How do I get imputation quality estimates?
-3
MaCH FAQ
How do I get imputation quality estimates?
-6
MaCH FAQ
Install MaCH
-3
MaCH FAQ
How do I get reference files for an region of interest?
-3
MaCH FAQ
How do I interpret the imputation quality estimates?
-3
MaCH FAQ
Where can I find HapMap III / 1000 Genomes reference files?
-3
MaCH FAQ
Where can I find combined HapMap reference files?
-3
MaCH FAQ
minimac
-3
TrioCaller:Archive
no edit summary
-6
RareSimu
Download
-3
BamGenotypeCheck
Download bamGenotypeCheck
-4
Karma
Download Karma
-4
Template:SeqShopExtSetup
Download the Workshop Example Data
-3
SeqShop: Sequence Mapping and Assembly Practical, June 2014
Download the example data
-3
BAM Review Action Items
Useful Links
-6
C++ Class: SamFileHeader
Sam Header Basics
-3
C++ Class: SamFileHeader
Sam Header Basics
-3
C++ Class: SamFile
SamFileWriter
-3
