User contributions
From Genome Analysis Wiki
- 12:08, 21 February 2017 (diff | hist) . . (+10) . . Thunder (→(step 2) Genotype/haplotype calling using thunder thunder_glf_freq) (current)
- 12:06, 21 February 2017 (diff | hist) . . (-2) . . Thunder (→(step 2) Genotype/haplotype calling using thunder thunder_glf_freq)
- 10:34, 21 February 2017 (diff | hist) . . (-4) . . Famrvtest (→PED and DAT Files) (current)
- 12:03, 2 February 2017 (diff | hist) . . (-3) . . CalcMatch (→Download) (current)
- 12:02, 2 February 2017 (diff | hist) . . (0) . . MaCH: machX (current)
- 12:01, 2 February 2017 (diff | hist) . . (-3) . . BAM Review Action Items (→Accessing String Values) (current)
- 12:00, 2 February 2017 (diff | hist) . . (-4) . . C++ Class: CigarRoller (→Cigar) (current)
- 11:58, 2 February 2017 (diff | hist) . . (-6) . . VcfCodingSnps (current)
- 11:57, 2 February 2017 (diff | hist) . . (-3) . . TabAnno (→Contact) (current)
- 11:55, 2 February 2017 (diff | hist) . . (-21) . . TabAnno (→Quick tutorial)
- 11:53, 2 February 2017 (diff | hist) . . (-3) . . UMAKE (→Exercise with Example Resources) (current)
- 11:51, 2 February 2017 (diff | hist) . . (-3) . . LASER (→Advanced options) (current)
- 11:42, 2 February 2017 (diff | hist) . . (-9) . . QPLOT (→Source Code Distribution) (current)
- 11:41, 2 February 2017 (diff | hist) . . (-3) . . QPLOT (→Binary Download)
- 11:36, 2 February 2017 (diff | hist) . . (-3) . . CheckVCF.py (→Download) (current)
- 11:35, 2 February 2017 (diff | hist) . . (-3) . . Rare variant tests (→Summary of rare variant tests for sequence data) (current)
- 11:34, 2 February 2017 (diff | hist) . . (-3) . . SplitRef (→Download) (current)
- 11:33, 2 February 2017 (diff | hist) . . (-3) . . SplitPed (→Download) (current)
- 11:33, 2 February 2017 (diff | hist) . . (-6) . . SplitPed (→Required Input Files)
- 11:31, 2 February 2017 (diff | hist) . . (-6) . . CalcMatch
- 11:31, 2 February 2017 (diff | hist) . . (-3) . . MaCH: Input Files (→Optional Phased Haplotypes) (current)
- 11:30, 2 February 2017 (diff | hist) . . (-3) . . MaCH: Input Files (→Optional Phased Haplotypes)
- 11:29, 2 February 2017 (diff | hist) . . (-6) . . MaCH: Input Files
- 11:28, 2 February 2017 (diff | hist) . . (-3) . . MaCH: machX (→Reference Haplotypes)
- 11:28, 2 February 2017 (diff | hist) . . (-3) . . MaCH: machX (→Your Own Data)
- 11:27, 2 February 2017 (diff | hist) . . (-3) . . Thunder (→Ligate Haplotypes)
- 11:27, 2 February 2017 (diff | hist) . . (-3) . . Thunder (→Example Showing the Whole Pipeline)
- 11:26, 2 February 2017 (diff | hist) . . (-9) . . Thunder (→(step 2) Genotype/haplotype calling using thunder thunder_glf_freq)
- 11:25, 2 February 2017 (diff | hist) . . (-3) . . Thunder (→(step 1) Site promotion using software glfMultiples GPT_Freq)
- 11:24, 2 February 2017 (diff | hist) . . (-3) . . Mach DAC (→Post Phasing/Imputation Ligation) (current)
- 11:24, 2 February 2017 (diff | hist) . . (-3) . . Mach DAC (→Phasing/Imputation with External Reference)
- 11:24, 2 February 2017 (diff | hist) . . (-3) . . Mach DAC (→Split Your Data)
- 11:22, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→How do I get imputation quality estimates?) (current)
- 11:22, 2 February 2017 (diff | hist) . . (-6) . . MaCH FAQ (→How do I get imputation quality estimates?)
- 11:21, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→Install MaCH)
- 11:21, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→How do I get reference files for an region of interest?)
- 11:20, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→How do I interpret the imputation quality estimates?)
- 11:20, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→Where can I find HapMap III / 1000 Genomes reference files?)
- 11:20, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→Where can I find combined HapMap reference files?)
- 11:19, 2 February 2017 (diff | hist) . . (-3) . . MaCH FAQ (→minimac)
- 11:14, 2 February 2017 (diff | hist) . . (-6) . . TrioCaller:Archive (current)
- 11:11, 2 February 2017 (diff | hist) . . (-3) . . RareSimu (→Download) (current)
- 11:11, 2 February 2017 (diff | hist) . . (-4) . . BamGenotypeCheck (→Download bamGenotypeCheck) (current)
- 11:10, 2 February 2017 (diff | hist) . . (-4) . . Karma (→Download Karma) (current)
- 11:09, 2 February 2017 (diff | hist) . . (-3) . . Template:SeqShopExtSetup (→Download the Workshop Example Data) (current)
- 11:07, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Sequence Mapping and Assembly Practical, June 2014 (→Download the example data) (current)
- 11:06, 2 February 2017 (diff | hist) . . (-6) . . BAM Review Action Items (→Useful Links)
- 11:05, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: SamFileHeader (→Sam Header Basics) (current)
- 11:04, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: SamFileHeader (→Sam Header Basics)
- 11:03, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: SamFile (→SamFileWriter) (current)
- 11:03, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: SamFile (→SamFileReader)
- 11:03, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: SamFile (→Class Documentation)
- 11:02, 2 February 2017 (diff | hist) . . (-4) . . C++ Class: SamRecord (→Getting/Setting fields in a SAM/BAM Record) (current)
- 11:01, 2 February 2017 (diff | hist) . . (-18) . . LibStatGen: GLF (→GLF Classes) (current)
- 11:00, 2 February 2017 (diff | hist) . . (-3) . . FastQValidator (→Return Value) (current)
- 10:58, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: FastQFile (→Reading/Validating FastQ Files In Your Program) (current)
- 10:55, 2 February 2017 (diff | hist) . . (-39) . . LibStatGen: BAM (→BAM/SAM Classes) (current)
- 10:52, 2 February 2017 (diff | hist) . . (-4) . . C++ Class: CigarRoller (→CigarRoller)
- 10:51, 2 February 2017 (diff | hist) . . (-7) . . LibStatGen: general (→Genetics Based Classes) (current)
- 10:50, 2 February 2017 (diff | hist) . . (0) . . LibStatGen: general (→Basic Programming Classes)
- 10:49, 2 February 2017 (diff | hist) . . (-10) . . LibStatGen: FASTQ (→Classes in the FASTQ Portion of Library) (current)
- 10:47, 2 February 2017 (diff | hist) . . (-4) . . C++ Class: InputFile (→InputFile Class Documentation) (current)
- 10:47, 2 February 2017 (diff | hist) . . (-3) . . C++ Class: InputFile (→Global IFILE Methods)
- 10:37, 2 February 2017 (diff | hist) . . (-1) . . SAM/BAM Convert Sequence (→Proposed Solution) (current)
- 10:36, 2 February 2017 (diff | hist) . . (-7) . . SAM/BAM Convert Sequence (→Proposed Solution)
- 10:32, 2 February 2017 (diff | hist) . . (-3) . . TabAnno (→Built-in example)
- 10:31, 2 February 2017 (diff | hist) . . (-3) . . VerifyBamID (→Download verifyBamID)
- 10:30, 2 February 2017 (diff | hist) . . (-3) . . UMAKE (→Download UMAKE)
- 10:28, 2 February 2017 (diff | hist) . . (-3) . . Test EPACTS for DIAGRAM (→Download EPACTS) (current)
- 10:27, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Genetic Association Analysis Practical, December 2014 (→Download & Build EPACTS) (current)
- 10:27, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Genetic Association Analysis Practical, June 2014 (→Download & Build EPACTS) (current)
- 10:24, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Getting started) (current)
- 10:23, 2 February 2017 (diff | hist) . . (-4) . . SeqShop: Estimates of Genetic Ancestry Practical, June 2014 (→Getting started) (current)
- 10:05, 2 February 2017 (diff | hist) . . (-7) . . EPACTS for DIAGRAM (→A. Convert dosage file into VCF format) (current)
- 10:02, 2 February 2017 (diff | hist) . . (-3) . . ChunkChromosome (→Download) (current)
- 10:01, 2 February 2017 (diff | hist) . . (-6) . . ExomePicks (→Download) (current)
- 09:59, 2 February 2017 (diff | hist) . . (-3) . . EPACTS for DIAGRAM (→For External Users)
- 09:58, 2 February 2017 (diff | hist) . . (-3) . . EMMAX (→Download EMMAX) (current)
- 09:57, 2 February 2017 (diff | hist) . . (-1) . . LASER (→Introduction)
- 09:57, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Estimates of Genetic Ancestry Practical, May 2015 (→Introduction) (current)
- 09:56, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (→Introduction)
- 09:56, 2 February 2017 (diff | hist) . . (-3) . . SeqShop: Estimates of Genetic Ancestry Practical, June 2014 (→Introduction)
- 09:55, 2 February 2017 (diff | hist) . . (-3) . . LASER (→Introduction)
- 09:53, 2 February 2017 (diff | hist) . . (-3) . . LASER (→Download)
- 13:07, 1 February 2017 (diff | hist) . . (-1) . . Famrvtest (→PED and DAT Files)
- 13:07, 1 February 2017 (diff | hist) . . (+1) . . Famrvtest (→PED and DAT Files)
- 13:06, 1 February 2017 (diff | hist) . . (0) . . Famrvtest (→PED and DAT Files)
- 15:54, 31 January 2017 (diff | hist) . . (-2) . . C++ Library: libStatGen (→Library Documentation)
- 15:54, 31 January 2017 (diff | hist) . . (+14) . . C++ Library: libStatGen (→Library Documentation)
- 15:53, 31 January 2017 (diff | hist) . . (+2) . . C++ Library: libStatGen (→Library Documentation)
- 15:48, 31 January 2017 (diff | hist) . . (+148) . . C++ Library: libStatGen (→Library Documentation)
- 11:14, 30 November 2016 (diff | hist) . . (-1) . . EPACTS (→Installation Details)
- 10:54, 30 November 2016 (diff | hist) . . (+19) . . EPACTS (→Obtaining EPACTS)
- 10:40, 30 November 2016 (diff | hist) . . (-5) . . EPACTS (→Obtaining EPACTS)
- 10:39, 30 November 2016 (diff | hist) . . (+2) . . EPACTS (→Obtaining EPACTS)
- 11:40, 16 March 2016 (diff | hist) . . (-153) . . Genezoom (→Download from webpage) (current)
