User contributions
From Genome Analysis Wiki
Jump to navigationJump to search- 13:34, 20 November 2019 diff hist +289 RAREMETALWORKER →PED and DAT Files current
- 16:41, 13 November 2019 diff hist +442 Talk:METAL Documentation current
- 13:00, 16 May 2018 diff hist +69 LocusZoom Standalone →METAL formatted file
- 15:52, 22 December 2017 diff hist +100 METAL Documentation →Sample Overlap Correction current
- 15:48, 22 December 2017 diff hist 0 N File:METAL sample overlap method 2017-11-15.pdf current
- 15:40, 22 December 2017 diff hist +913 METAL Documentation →Additional Analysis Options
- 15:35, 22 December 2017 diff hist 0 N File:METAL sample overlap 2017-11-15.pptx current
- 13:14, 26 July 2017 diff hist +139 CSG Tech Talks →Upcoming Schedule
- 13:12, 26 July 2017 diff hist +40 CSG Tech Talks →Upcoming Schedule
- 14:28, 31 May 2017 diff hist -1,407 LocusZoom Standalone
- 16:34, 2 June 2016 diff hist +123 CSG Tech Talks
- 17:04, 2 May 2016 diff hist +60 LocusZoom Standalone →Plotting BED tracks
- 14:28, 17 May 2015 diff hist +65 RAREMETALWORKER →LD Matrices
- 14:26, 17 May 2015 diff hist +2 RAREMETALWORKER →Summary Statistics
- 21:50, 12 January 2015 diff hist +23 LocusZoom Standalone →Plotting options
- 21:50, 12 January 2015 diff hist +63 LocusZoom Standalone →Plotting options
- 21:50, 12 January 2015 diff hist +1 LocusZoom Standalone
- 00:14, 3 September 2014 diff hist +150 LocusZoom Standalone →Plotting BED tracks
- 13:16, 1 September 2014 diff hist +41 LocusZoom Standalone →Fine-mapping credible sets
- 20:41, 26 June 2014 diff hist +6 LocusZoom Standalone →Plotting BED tracks
- 17:33, 23 June 2014 diff hist -36 LocusZoom Standalone →Plotting BED tracks
- 17:33, 23 June 2014 diff hist +3 LocusZoom Standalone →Plotting BED tracks
- 17:30, 23 June 2014 diff hist +5,442 LocusZoom Standalone
- 14:28, 23 June 2014 diff hist 0 N File:Bed tracks.png current
- 15:21, 11 June 2014 diff hist 0 LocusZoom Standalone →GWAS catalog variants
- 18:14, 9 March 2014 diff hist +13 LocusZoom Standalone →EPACTS formatted file
- 18:13, 9 March 2014 diff hist 0 LocusZoom Standalone →Plotting LD with additional reference SNPs
- 18:10, 9 March 2014 diff hist +198 LocusZoom Standalone →EPACTS formatted file
- 12:41, 14 January 2014 diff hist -50 LocusZoom Standalone →LocusZoom options
- 15:06, 10 September 2013 diff hist +26 Ligate Minimac current
- 15:04, 10 September 2013 diff hist +48 Ligate Minimac
- 15:02, 10 September 2013 diff hist +1,446 N Ligate Minimac Created page with "A script to ligate together chunks created by minimac: [http://csg.sph.umich.edu/boehnke/ligate_minimac/ligate_minimac.py ligate_minimac.py] Usage instructions (can also ru..."
- 16:31, 9 May 2013 diff hist +25 LocusZoom Standalone 1.2
- 16:30, 9 May 2013 diff hist +24 LocusZoom Standalone 1.2
- 16:30, 9 May 2013 diff hist -41,649 LocusZoom Standalone 1.2 Blanked the page
- 16:29, 9 May 2013 diff hist -1 LocusZoom Standalone →Quick Start (Requirements)
- 16:29, 9 May 2013 diff hist +10,459 LocusZoom Standalone
- 14:37, 9 May 2013 diff hist -6 LocusZoom Standalone 1.2 →GWAS catalog variants
- 14:37, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →GWAS catalog variants
- 14:36, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →GWAS catalog variants
- 14:36, 9 May 2013 diff hist -1 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 14:36, 9 May 2013 diff hist +46 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 14:30, 9 May 2013 diff hist +79 LocusZoom Standalone 1.2
- 14:29, 9 May 2013 diff hist +259 LocusZoom Standalone 1.2
- 14:27, 9 May 2013 diff hist +24 LocusZoom Standalone 1.2 →Changes in Version 1.2
- 14:27, 9 May 2013 diff hist -2 LocusZoom Standalone 1.2 →Changes in Version 1.2
- 14:26, 9 May 2013 diff hist +271 LocusZoom Standalone 1.2
- 14:23, 9 May 2013 diff hist +309 LocusZoom Standalone 1.2 →Changing m2zfast.conf settings
- 14:21, 9 May 2013 diff hist +257 LocusZoom Standalone 1.2 →LocusZoom options
- 14:07, 9 May 2013 diff hist +39 LocusZoom Standalone 1.2 →Labeling multiple SNPs
- 14:05, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Optional Input
- 14:04, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Labeling multiple SNPs
- 14:04, 9 May 2013 diff hist +623 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 14:01, 9 May 2013 diff hist 0 N File:New lz denote markers.png current
- 13:40, 9 May 2013 diff hist +91 LocusZoom Standalone 1.2 →LocusZoom options
- 13:38, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 13:37, 9 May 2013 diff hist +165 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 13:36, 9 May 2013 diff hist +8 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 13:36, 9 May 2013 diff hist 0 LocusZoom Standalone 1.2 →GWAS catalog variants
- 13:36, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →GWAS catalog variants
- 13:35, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →GWAS catalog variants
- 13:35, 9 May 2013 diff hist -8 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 13:33, 9 May 2013 diff hist 0 N File:New lz gwas summary.png current
- 13:33, 9 May 2013 diff hist 0 N File:New lz finemap summary.png current
- 13:33, 9 May 2013 diff hist 0 N File:New lz gwas cat.png current
- 13:32, 9 May 2013 diff hist 0 N File:New lz finemap.png current
- 13:32, 9 May 2013 diff hist 0 N File:New lz cond only.png current
- 11:59, 9 May 2013 diff hist 0 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 11:58, 9 May 2013 diff hist +408 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 11:52, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 11:52, 9 May 2013 diff hist +1,232 LocusZoom Standalone 1.2 →Fine-mapping credible sets
- 11:52, 9 May 2013 diff hist +47 LocusZoom Standalone 1.2 →GWAS catalog variants
- 11:51, 9 May 2013 diff hist +99 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:50, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:50, 9 May 2013 diff hist +130 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:49, 9 May 2013 diff hist -66 LocusZoom Standalone 1.2 →GWAS catalog variants
- 11:48, 9 May 2013 diff hist +1,042 LocusZoom Standalone 1.2 →GWAS catalog variants
- 11:47, 9 May 2013 diff hist 0 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:47, 9 May 2013 diff hist +18 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:46, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:45, 9 May 2013 diff hist -1 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:45, 9 May 2013 diff hist +8 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 11:45, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:44, 9 May 2013 diff hist 0 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:44, 9 May 2013 diff hist -135 LocusZoom Standalone 1.2 →Plotting LD with additional reference SNPs
- 11:44, 9 May 2013 diff hist +1,792 LocusZoom Standalone 1.2 →Optional Input
- 11:43, 9 May 2013 diff hist 0 N File:Lz gwas summary.png current
- 11:42, 9 May 2013 diff hist 0 N File:Lz gwas cat.png current
- 11:42, 9 May 2013 diff hist 0 N File:Lz finemap summary.png current
- 11:42, 9 May 2013 diff hist 0 N File:Lz finemap.png current
- 11:42, 9 May 2013 diff hist 0 N File:Lz cond only.png current
- 11:30, 9 May 2013 diff hist +62 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:29, 9 May 2013 diff hist -120 LocusZoom Standalone 1.2
- 11:29, 9 May 2013 diff hist -2 LocusZoom Standalone →Quick Start (Requirements)
- 11:28, 9 May 2013 diff hist -118 LocusZoom Standalone →Quick Start (Requirements)
- 11:27, 9 May 2013 diff hist +141 LocusZoom Standalone 1.2
- 11:23, 9 May 2013 diff hist +2 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:23, 9 May 2013 diff hist +55 LocusZoom Standalone 1.2 →Quick Start (Requirements)
- 11:21, 9 May 2013 diff hist +11 LocusZoom Standalone 1.2 →Sources of information
- 11:21, 9 May 2013 diff hist -1 LocusZoom Standalone 1.2 →Sources of information
- 11:21, 9 May 2013 diff hist +98 LocusZoom Standalone 1.2 →Sources of information
- 11:13, 9 May 2013 diff hist +4 LocusZoom Standalone 1.2 →EPACTS formatted file
- 11:13, 9 May 2013 diff hist +1,784 LocusZoom Standalone 1.2 →EPACTS formatted file
- 11:03, 9 May 2013 diff hist +33 LocusZoom Standalone 1.2 →Association results file
- 11:03, 9 May 2013 diff hist +21 LocusZoom Standalone 1.2 →Association results file ("metal" file)
- 11:01, 9 May 2013 diff hist +36 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 11:01, 9 May 2013 diff hist +181 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 10:56, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Batch mode
- 10:55, 9 May 2013 diff hist +1 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 10:54, 9 May 2013 diff hist +7 LocusZoom Standalone 1.2 →Supply VCF files for calculating LD
- 10:54, 9 May 2013 diff hist +561 LocusZoom Standalone 1.2 →Input
- 10:53, 9 May 2013 diff hist +233 LocusZoom Standalone 1.2 →Specifying LD source/population/build
- 10:51, 9 May 2013 diff hist +82 LocusZoom Standalone 1.2 →Specifying LD source/population/build
- 10:50, 9 May 2013 diff hist +36 LocusZoom Standalone 1.2 →Step 3: Install LD calculation software (optional)
- 10:50, 9 May 2013 diff hist +12 LocusZoom Standalone 1.2 →Step 3: Install LD calculation software (optional)
- 10:49, 9 May 2013 diff hist -14 LocusZoom Standalone 1.2 →Step 3: Install LD calculation software (optional)
- 10:49, 9 May 2013 diff hist +10 LocusZoom Standalone 1.2 →Step 3: Install LD calculation software (optional)
- 10:48, 9 May 2013 diff hist -15 LocusZoom Standalone 1.2 →Installation
- 10:48, 9 May 2013 diff hist +364 LocusZoom Standalone 1.2 →Step 3: Install new_fugue
- 10:47, 9 May 2013 diff hist +31,310 N LocusZoom Standalone 1.2 Created page with '{| align="right" |- | __TOC__ |} <br> Image:LocusZoomSmall.png This page contains information regarding a version of LocusZoom that may be downloaded for personal use. For…'
- 10:21, 9 May 2013 diff hist +29 LocusZoom Standalone →Use HapMap YRI for LD
- 10:21, 9 May 2013 diff hist -114 LocusZoom Standalone →Examples
- 10:01, 24 April 2013 diff hist +9 LocusZoom Standalone →Step 5: Install LocusZoom
- 10:00, 24 April 2013 diff hist 0 LocusZoom Standalone →Installation
- 10:00, 24 April 2013 diff hist +2 LocusZoom Standalone →Installation
- 10:00, 24 April 2013 diff hist +35 LocusZoom Standalone →Installation
- 09:59, 24 April 2013 diff hist -34 LocusZoom Standalone →Synopsis
- 13:55, 17 August 2011 diff hist +32 LocusZoom Standalone →LocusZoom options
- 12:40, 4 August 2011 diff hist +123 LocusZoom Standalone
- 17:56, 29 July 2011 diff hist -11 LocusZoom Standalone →Changing m2zfast.conf settings
- 17:53, 29 July 2011 diff hist +108 LocusZoom Standalone →User-supplied LD
- 17:52, 29 July 2011 diff hist -495 LocusZoom Standalone
- 17:51, 29 July 2011 diff hist +241 LocusZoom Standalone →Specifying LD source/population/build
- 17:49, 29 July 2011 diff hist +218 LocusZoom Standalone →Region
- 17:46, 29 July 2011 diff hist -10 LocusZoom Standalone →Sources of information
- 17:46, 29 July 2011 diff hist +417 LocusZoom Standalone →Installation
- 17:42, 29 July 2011 diff hist +81 LocusZoom Standalone
- 15:46, 5 April 2011 diff hist -2 Garlic →Creating a configuration file current
- 21:21, 4 April 2011 diff hist +95 Garlic →Reporting bugs/issues
- 21:21, 4 April 2011 diff hist +54 Garlic
- 21:20, 4 April 2011 diff hist +487 Garlic →Output
- 21:16, 4 April 2011 diff hist -4 Garlic →Running garlic
- 21:15, 4 April 2011 diff hist +3,999 N Garlic Created page with '{| align="right" |- | __TOC__ |} Garlic is a quality control program for GWAS association results. These results would typically be fed into a meta-analysis program such as META…'
- 13:35, 27 September 2010 diff hist +91 New Fugue →Download current
- 11:50, 27 September 2010 diff hist -7 LocusZoom Standalone →An example using plotting parameters
- 11:50, 27 September 2010 diff hist +231 LocusZoom Standalone →An example using plotting parameters
- 11:48, 27 September 2010 diff hist +165 LocusZoom Standalone →Examples
- 11:45, 27 September 2010 diff hist 0 LocusZoom Standalone →Association results file ("metal" file)
- 11:45, 27 September 2010 diff hist +6 LocusZoom Standalone →LocusZoom options
- 11:44, 27 September 2010 diff hist -2 LocusZoom Standalone →LocusZoom options
- 11:42, 27 September 2010 diff hist +209 LocusZoom Standalone →LocusZoom options
- 11:41, 27 September 2010 diff hist +1 LocusZoom Standalone →Specifying LD source/population/build
- 11:40, 27 September 2010 diff hist -1 LocusZoom Standalone →Input
- 11:39, 27 September 2010 diff hist +465 LocusZoom Standalone →Specifying LD source/population/build
- 11:35, 27 September 2010 diff hist +847 LocusZoom Standalone →Specifying LD source/population/build
- 11:16, 27 September 2010 diff hist +198 LocusZoom Standalone →Input
- 11:12, 27 September 2010 diff hist -130 LocusZoom Standalone →LocusZoom options
- 12:57, 21 June 2010 diff hist +83 LocusZoom Standalone →Download
- 12:56, 21 June 2010 diff hist -57 LocusZoom Standalone
- 23:19, 10 June 2010 diff hist +46 LocusZoom Standalone →Quick Start (Requirements)
- 15:05, 7 June 2010 diff hist 0 LocusZoom Standalone →Quick Start (Requirements)
- 15:03, 7 June 2010 diff hist +2 LocusZoom Standalone →Sources of information
- 15:02, 7 June 2010 diff hist 0 LocusZoom Standalone →Sources of information
- 15:02, 7 June 2010 diff hist +29 LocusZoom Standalone →Sources of information
- 14:57, 7 June 2010 diff hist -8 LocusZoom Standalone →Sources of information
- 14:55, 7 June 2010 diff hist +196 LocusZoom Standalone →Sources of SQLite database tables
- 14:28, 7 June 2010 diff hist +41 LocusZoom Standalone →Quick Start (Requirements)
- 08:46, 6 June 2010 diff hist +63 LocusZoom Standalone
- 10:09, 2 June 2010 diff hist +518 LocusZoom Standalone →License
- 14:44, 1 June 2010 diff hist +60 LocusZoom Standalone →Step 3: Install new_fugue
- 14:43, 1 June 2010 diff hist 0 LocusZoom Standalone →Plotting Options
- 14:42, 1 June 2010 diff hist 0 LocusZoom Standalone →LocusZoom Options
- 14:42, 1 June 2010 diff hist +10 LocusZoom Standalone →Options
- 14:58, 26 May 2010 diff hist 0 LocusZoom Standalone →Use hapmap YRI for LD
- 10:29, 26 May 2010 diff hist +18 LocusZoom Standalone →Examples
- 10:29, 26 May 2010 diff hist +149 LocusZoom Standalone →Examples
- 10:21, 26 May 2010 diff hist -17 LocusZoom Standalone →Creating a SQLite database
- 10:20, 26 May 2010 diff hist +19 LocusZoom Standalone →Step 4: Install LocusZoom
- 10:18, 26 May 2010 diff hist -19 LocusZoom Standalone →User-supplied LD
- 10:17, 26 May 2010 diff hist +20 LocusZoom Standalone →User-supplied LD
- 10:17, 26 May 2010 diff hist +2 LocusZoom Standalone →LD cache
- 10:16, 26 May 2010 diff hist +1,118 LocusZoom Standalone →Advanced configuration
- 10:16, 26 May 2010 diff hist -1,118 LocusZoom Standalone →LD cache
- 10:15, 26 May 2010 diff hist +247 LocusZoom Standalone →Examples
- 09:57, 26 May 2010 diff hist +445 LocusZoom Standalone →Examples
- 09:53, 26 May 2010 diff hist -10 LocusZoom Standalone
- 09:15, 26 May 2010 diff hist +169 LocusZoom Standalone →LD cache
- 09:13, 26 May 2010 diff hist +949 LocusZoom Standalone →Input
- 18:08, 25 May 2010 diff hist -3 LocusZoom Standalone →Changing m2zfast.conf settings
- 16:06, 25 May 2010 diff hist +275 LocusZoom Standalone →Changing m2zfast.conf settings
- 15:03, 25 May 2010 diff hist +104 LocusZoom Standalone →Changing m2zfast.conf settings
- 15:02, 25 May 2010 diff hist +569 m LocusZoom Standalone →Changing m2zfast.conf settings
- 14:45, 25 May 2010 diff hist +337 LocusZoom Standalone →Changing m2zfast.conf settings
- 14:42, 25 May 2010 diff hist +1,110 LocusZoom Standalone →Making LocusZoom aware of your new database
- 14:21, 25 May 2010 diff hist +662 LocusZoom Standalone →Inserting snp_set
- 14:16, 25 May 2010 diff hist +54 LocusZoom Standalone →Creating a SQLite database
- 14:15, 25 May 2010 diff hist +5 LocusZoom Standalone →Options
- 14:07, 25 May 2010 diff hist +69 LocusZoom Standalone →Inserting recomb_rate
- 14:06, 25 May 2010 diff hist +42 LocusZoom Standalone →Inserting recomb_rate
- 14:06, 25 May 2010 diff hist +532 LocusZoom Standalone →Inserting recomb_rate
- 14:03, 25 May 2010 diff hist -6 LocusZoom Standalone →Options
- 14:02, 25 May 2010 diff hist +851 LocusZoom Standalone →Inserting refFlat
- 13:46, 25 May 2010 diff hist -1 LocusZoom Standalone
- 13:35, 25 May 2010 diff hist +877 LocusZoom Standalone →Advanced configuration
- 13:11, 25 May 2010 diff hist +1,098 LocusZoom Standalone
- 12:39, 25 May 2010 diff hist +798 LocusZoom Standalone →Advanced configuration
- 11:11, 25 May 2010 diff hist +51 LocusZoom Standalone →Requirements
- 11:10, 25 May 2010 diff hist +32 LocusZoom Standalone
- 11:09, 25 May 2010 diff hist +288 LocusZoom Standalone →Advanced configuration
- 11:00, 25 May 2010 diff hist +54 LocusZoom Standalone →User-supplied LD
- 10:59, 25 May 2010 diff hist +86 m LocusZoom Standalone →Batch mode
- 10:55, 25 May 2010 diff hist +10 LocusZoom Standalone →User-supplied LD
- 10:55, 25 May 2010 diff hist +42 LocusZoom Standalone →User-supplied LD
- 10:51, 25 May 2010 diff hist +10 LocusZoom Standalone →User-supplied LD
- 10:51, 25 May 2010 diff hist +348 LocusZoom Standalone
- 10:43, 25 May 2010 diff hist +312 LocusZoom Standalone →User-supplied LD
- 10:42, 25 May 2010 diff hist -5 LocusZoom Standalone →Batch mode
- 10:39, 25 May 2010 diff hist 0 LocusZoom Standalone →Batch mode
- 10:39, 25 May 2010 diff hist 0 LocusZoom Standalone →Batch mode
- 10:38, 25 May 2010 diff hist +1,833 LocusZoom Standalone →Batch mode
- 10:13, 25 May 2010 diff hist +3 LocusZoom Standalone →Batch mode
- 10:10, 25 May 2010 diff hist +304 LocusZoom Standalone →Association results file ("metal" file)
- 10:06, 25 May 2010 diff hist +727 LocusZoom Standalone →Batch mode
- 09:59, 25 May 2010 diff hist +9 LocusZoom Standalone
- 09:53, 25 May 2010 diff hist +2,876 LocusZoom Standalone
- 09:32, 25 May 2010 diff hist +278 LocusZoom Standalone
- 18:16, 24 May 2010 diff hist +968 LocusZoom Standalone
- 16:48, 24 May 2010 diff hist +3,702 LocusZoom Standalone
- 14:53, 24 May 2010 diff hist 0 N File:FADS1 small.png current
- 14:49, 24 May 2010 diff hist -26 LocusZoom Standalone
- 14:47, 24 May 2010 diff hist +62 LocusZoom Standalone
- 14:46, 24 May 2010 diff hist 0 N File:FADS1 locus.png current
- 14:44, 24 May 2010 diff hist +452 LocusZoom Standalone
- 16:02, 20 May 2010 diff hist +99 LocusZoom Standalone
- 11:16, 20 May 2010 diff hist +369 LocusZoom Standalone
- 10:53, 20 May 2010 diff hist +381 LocusZoom Standalone
- 10:38, 20 May 2010 diff hist +23 LocusZoom Standalone
- 10:37, 20 May 2010 diff hist +123 LocusZoom Standalone
- 10:33, 20 May 2010 diff hist +76 N LocusZoom Standalone Created page with 'Placeholder for documentation regarding the standalone version of LocusZoom.'