User contributions
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Jump to navigationJump to search- 22:12, 5 February 2013 diff hist +122 Mach2dat: Association with MACH output current
- 07:56, 16 May 2012 diff hist +296 Thunder
- 16:13, 24 April 2012 diff hist +12 MaCH FAQ →MaCH-Admix
- 16:12, 24 April 2012 diff hist +20 MaCH FAQ →MaCH-Admix
- 15:59, 27 March 2012 diff hist -4 MaCH FAQ →MaCH-Admix
- 15:58, 27 March 2012 diff hist -2 MaCH FAQ →MaCH-Admix
- 16:58, 23 February 2012 diff hist 0 Thunder
- 16:57, 23 February 2012 diff hist -1 Thunder →Input Data
- 07:31, 2 February 2012 diff hist -2 Thunder →(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
- 07:31, 2 February 2012 diff hist +17 Thunder →(step 2) Genotype/haplotype calling using thunder thunder_glf_freq
- 17:38, 15 January 2012 diff hist -2 MaCH FAQ →How do I get reference files for an region of interest?
- 17:38, 15 January 2012 diff hist +344 MaCH FAQ →How do I get reference files for an region of interest?
- 17:38, 13 January 2012 diff hist +7 MaCH FAQ →MaCH-Admix
- 17:37, 13 January 2012 diff hist +14 MaCH FAQ →MaCH-Admix
- 17:37, 13 January 2012 diff hist +50 MaCH FAQ →MaCH-Admix
- 17:36, 13 January 2012 diff hist +428 MaCH FAQ →minimac
- 16:58, 29 November 2011 diff hist +11 MaCH FAQ →minimac
- 08:24, 17 November 2011 diff hist +124 MaCH FAQ →How do I get reference files for an region of interest?
- 08:23, 17 November 2011 diff hist +38 MaCH FAQ →How do I get reference files for an region of interest?
- 15:27, 7 November 2011 diff hist 0 Mach DAC
- 11:20, 3 November 2011 diff hist +108 Thunder
- 11:18, 3 November 2011 diff hist +48 Thunder
- 20:15, 4 August 2011 diff hist +2 MaCH FAQ →How do I get reference files for an region of interest?
- 21:22, 29 July 2011 diff hist -117 MaCH FAQ →Do I always have to sort the pedigree file by marker position?
- 21:21, 29 July 2011 diff hist +166 MaCH FAQ →How do I get reference files for an region of interest?
- 15:29, 11 July 2011 diff hist +111 Thunder
- 19:07, 19 June 2011 diff hist +201 Thunder
- 12:01, 6 June 2011 diff hist +1,391 MaCH FAQ →minimac
- 20:30, 15 February 2011 diff hist -12 MaCH FAQ →How do I get imputation quality estimates?
- 14:22, 10 February 2011 diff hist +567 Mach DAC →Split Your Data
- 06:55, 10 February 2011 diff hist +347 Minimac
- 08:43, 8 February 2011 diff hist +28 Thunder →Important Filters
- 08:41, 8 February 2011 diff hist +39 Thunder →flanking sequence filter
- 08:38, 8 February 2011 diff hist +166 Thunder →Important Filters
- 08:37, 8 February 2011 diff hist 0 Thunder →total depth filter
- 08:36, 8 February 2011 diff hist +92 Thunder
- 07:01, 28 January 2011 diff hist +589 CalcMatch
- 12:53, 15 January 2011 diff hist 0 MaCH FAQ
- 12:51, 15 January 2011 diff hist +136 MaCH FAQ
- 18:04, 11 January 2011 diff hist +74 CalcMatch
- 08:53, 9 January 2011 diff hist 0 Thunder
- 08:53, 9 January 2011 diff hist 0 Thunder
- 09:29, 7 December 2010 diff hist +93 Mach DAC
- 09:27, 7 December 2010 diff hist +10 Mach DAC →Post Phasing/Imputation Ligation
- 09:27, 7 December 2010 diff hist +94 Mach DAC
- 09:19, 7 December 2010 diff hist +2,735 N SplitRef Created page with 'This page documents the splitRef program, which splits a reference haplotype file into smaller files with subsets of markers. == Input Files == === Required Input Files === ====…'
- 09:18, 5 December 2010 diff hist +99 MaCH FAQ →How do I get reference files for an region of interest?
- 16:18, 29 November 2010 diff hist -95 Mach DAC
- 15:33, 29 November 2010 diff hist +414 Mach DAC
- 14:52, 29 November 2010 diff hist +109 Mach DAC
- 14:42, 29 November 2010 diff hist +181 SplitPed →Example Commands
- 14:40, 29 November 2010 diff hist +123 SplitPed
- 14:39, 29 November 2010 diff hist +140 SplitPed →Example Commands
- 14:36, 29 November 2010 diff hist +781 SplitPed
- 14:28, 29 November 2010 diff hist +2,398 N SplitPed Created page with 'This page documents the splitPed program, which splits a pedigree file into smaller files with subsets of markers. == Input Files == === Required Input Files === ==== Pedigree f…'
- 12:50, 29 November 2010 diff hist +660 Mach DAC
- 08:29, 29 November 2010 diff hist +437 MaCH: machX
- 08:27, 29 November 2010 diff hist +74 Thunder
- 08:22, 29 November 2010 diff hist +140 MaCH FAQ
- 21:13, 28 November 2010 diff hist +4 MaCH FAQ →Why and how to perform a 2-step imputation?
- 21:12, 28 November 2010 diff hist +167 N Mach DAC Created page with 'This is the MaCH Divide and Conquer page, documenting how to break the genome into smaller pieces before imputation/phasing and how to ligate after imputation/phasing.'
- 21:10, 28 November 2010 diff hist +642 MaCH FAQ
- 21:05, 28 November 2010 diff hist -1 MaCH FAQ →Why and how to perform a 2-step imputation?
- 21:04, 28 November 2010 diff hist +59 MaCH FAQ →Why and how to perform a 2-step imputation?
- 09:49, 26 November 2010 diff hist +281 MaCH: machX →Impute
- 09:47, 26 November 2010 diff hist +260 MaCH: machX →Phase Your Own Data
- 09:44, 26 November 2010 diff hist -11 MaCH: machX →Reference Haplotypes
- 09:44, 26 November 2010 diff hist +12 MaCH: machX
- 09:43, 26 November 2010 diff hist +12 MaCH: machX
- 09:42, 26 November 2010 diff hist -1 MaCH: machX
- 09:41, 26 November 2010 diff hist 0 MaCH: machX
- 09:40, 26 November 2010 diff hist +1,018 N MaCH: machX Created page with 'This page documents how to perform X chromosome (non-pseudo-autosomal part) imputation using MaCH [http://www.sph.umich.edu/csg/yli/mach] and minimac [http://genome.sph.umich.edu…'
- 08:34, 26 November 2010 diff hist 0 MaCH current
- 08:33, 26 November 2010 diff hist +42 MaCH
- 07:17, 24 November 2010 diff hist +5 MaCH FAQ →How do I get reference files for an region of interest?
- 16:36, 19 November 2010 diff hist +33 MaCH FAQ →How long does imputation take?
- 18:22, 21 October 2010 diff hist +1 Haploxt →--r2Threshold or -t current
- 18:22, 21 October 2010 diff hist +34 Haploxt
- 18:20, 21 October 2010 diff hist +307 Haploxt →download
- 18:11, 21 October 2010 diff hist -1 Haploxt →.freq
- 18:10, 21 October 2010 diff hist +516 Haploxt
- 18:05, 21 October 2010 diff hist -2,290 Haploxt
- 13:31, 21 October 2010 diff hist +369 Haploxt
- 09:57, 21 October 2010 diff hist +35 Haploxt
- 09:56, 21 October 2010 diff hist +857 Haploxt
- 09:52, 21 October 2010 diff hist +4,021 N Haploxt Created page with 'haploxt is a C/C++ software developed by [https://www.sph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<su…'
- 09:34, 21 October 2010 diff hist +37 CalcMatch
- 16:04, 15 October 2010 diff hist +12 Thunder
- 15:59, 15 October 2010 diff hist +198 Thunder
- 15:56, 15 October 2010 diff hist +60 Thunder
- 15:56, 15 October 2010 diff hist +413 Thunder
- 15:51, 15 October 2010 diff hist +246 Thunder
- 15:48, 15 October 2010 diff hist +16 Thunder
- 15:41, 15 October 2010 diff hist +1 Thunder
- 15:40, 15 October 2010 diff hist +15 Thunder
- 15:40, 15 October 2010 diff hist +177 Thunder
- 15:29, 15 October 2010 diff hist +109 Thunder
- 15:22, 15 October 2010 diff hist +348 Thunder
- 15:17, 15 October 2010 diff hist +75 Thunder
- 13:12, 15 October 2010 diff hist +112 Thunder